miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25877 5' -57.1 NC_005337.1 + 53250 0.66 0.835327
Target:  5'- -gGCACCAGaua-CGGcCCGUGGACg- -3'
miRNA:   3'- ggCGUGGUCgaacGCU-GGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 53838 0.67 0.763563
Target:  5'- cUCGgACCGGCUggcgcUGCGcGCCGcGGACg- -3'
miRNA:   3'- -GGCgUGGUCGA-----ACGC-UGGCaCCUGaa -5'
25877 5' -57.1 NC_005337.1 + 54240 0.67 0.763563
Target:  5'- gCCGCGCCAGCgUGUucACCacGGACUa -3'
miRNA:   3'- -GGCGUGGUCGaACGc-UGGcaCCUGAa -5'
25877 5' -57.1 NC_005337.1 + 58820 0.67 0.773042
Target:  5'- gCUGCGCCAGaucgucggGCGcGCCGUGcGGCUc -3'
miRNA:   3'- -GGCGUGGUCgaa-----CGC-UGGCAC-CUGAa -5'
25877 5' -57.1 NC_005337.1 + 58910 0.77 0.247717
Target:  5'- gCGCGgcaggacuCCGGCgcgGCGACCGUGGACg- -3'
miRNA:   3'- gGCGU--------GGUCGaa-CGCUGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 59070 0.71 0.561381
Target:  5'- cCUGgGCCGGCagaaGACCGUGGACa- -3'
miRNA:   3'- -GGCgUGGUCGaacgCUGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 60946 0.68 0.714591
Target:  5'- gCCGCGCCGGCaUGCG-CaugGGGCg- -3'
miRNA:   3'- -GGCGUGGUCGaACGCuGgcaCCUGaa -5'
25877 5' -57.1 NC_005337.1 + 62794 0.67 0.762609
Target:  5'- aCCGCGuccggcguggcguCCAGCgagaccUGCGGCaCGUGGuACUUc -3'
miRNA:   3'- -GGCGU-------------GGUCGa-----ACGCUG-GCACC-UGAA- -5'
25877 5' -57.1 NC_005337.1 + 65129 0.7 0.60216
Target:  5'- gUCGCACUGGCcgcgaagGCGgccGCCGUGGACc- -3'
miRNA:   3'- -GGCGUGGUCGaa-----CGC---UGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 66853 0.66 0.835327
Target:  5'- cCCGaga-AGCgcaagUGCuGGCCGUGGACUUc -3'
miRNA:   3'- -GGCguggUCGa----ACG-CUGGCACCUGAA- -5'
25877 5' -57.1 NC_005337.1 + 68248 0.66 0.835327
Target:  5'- gCGCgGCCGGCgcguggGCGAgCGUcgaGGACUUc -3'
miRNA:   3'- gGCG-UGGUCGaa----CGCUgGCA---CCUGAA- -5'
25877 5' -57.1 NC_005337.1 + 68287 0.68 0.724565
Target:  5'- uCUGCgGCCGGCcgGCGG-CGUGGACg- -3'
miRNA:   3'- -GGCG-UGGUCGaaCGCUgGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 68484 0.75 0.328471
Target:  5'- gCCGCACCGggcgccgcGCUgcugGCGGCCGUGGGu-- -3'
miRNA:   3'- -GGCGUGGU--------CGAa---CGCUGGCACCUgaa -5'
25877 5' -57.1 NC_005337.1 + 71872 1.06 0.002812
Target:  5'- gCCGCACCAGCUUGCGACCGUGGACUUu -3'
miRNA:   3'- -GGCGUGGUCGAACGCUGGCACCUGAA- -5'
25877 5' -57.1 NC_005337.1 + 71896 0.74 0.387243
Target:  5'- aCCGCACCAGCgaccUGCGcACCGccuucgacgacagcgUGGACc- -3'
miRNA:   3'- -GGCGUGGUCGa---ACGC-UGGC---------------ACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 72465 0.66 0.843542
Target:  5'- gCCGcCGCCAuGCgcGUGGaCGUGGACUa -3'
miRNA:   3'- -GGC-GUGGU-CGaaCGCUgGCACCUGAa -5'
25877 5' -57.1 NC_005337.1 + 76037 0.67 0.753968
Target:  5'- gCCGCGCCGGaCUUGCGcuccaugaccGCCGcGcGGCg- -3'
miRNA:   3'- -GGCGUGGUC-GAACGC----------UGGCaC-CUGaa -5'
25877 5' -57.1 NC_005337.1 + 77642 0.69 0.688348
Target:  5'- gCGCGCCAGCgugcccgUGCGcgagGucucgcagacgauguCCGUGGACUg -3'
miRNA:   3'- gGCGUGGUCGa------ACGC----U---------------GGCACCUGAa -5'
25877 5' -57.1 NC_005337.1 + 80175 0.66 0.835327
Target:  5'- gCCGUGCCGGCgcGCGgacgcgcuccuGCCGcGGGCg- -3'
miRNA:   3'- -GGCGUGGUCGaaCGC-----------UGGCaCCUGaa -5'
25877 5' -57.1 NC_005337.1 + 82178 0.7 0.581697
Target:  5'- gCGCACCuGCacGCGGCCGccGGGCg- -3'
miRNA:   3'- gGCGUGGuCGaaCGCUGGCa-CCUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.