miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25877 5' -57.1 NC_005337.1 + 2098 0.66 0.809591
Target:  5'- gCCaGCGCCAGCgccuccgucGCGuCCGUGuGGCa- -3'
miRNA:   3'- -GG-CGUGGUCGaa-------CGCuGGCAC-CUGaa -5'
25877 5' -57.1 NC_005337.1 + 5407 0.66 0.818344
Target:  5'- gCGCAgCAGCUgcgcaguuCGGCCGUGGuCa- -3'
miRNA:   3'- gGCGUgGUCGAac------GCUGGCACCuGaa -5'
25877 5' -57.1 NC_005337.1 + 8068 0.71 0.561381
Target:  5'- aCGCACUcGCgcgugGCGuCCGUGGGCa- -3'
miRNA:   3'- gGCGUGGuCGaa---CGCuGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 10567 0.69 0.663837
Target:  5'- uCCGCAcgggcgugcCCAGCcgccgcacgGCGuCCGUGGACa- -3'
miRNA:   3'- -GGCGU---------GGUCGaa-------CGCuGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 10770 0.7 0.628886
Target:  5'- uCCGCACCGGCcaucgucaggcgGaCGACCGUcccGGACa- -3'
miRNA:   3'- -GGCGUGGUCGaa----------C-GCUGGCA---CCUGaa -5'
25877 5' -57.1 NC_005337.1 + 17579 0.68 0.704545
Target:  5'- gCCGCGCCA--UUGCGGCCGgcucgcccgcGGGCg- -3'
miRNA:   3'- -GGCGUGGUcgAACGCUGGCa---------CCUGaa -5'
25877 5' -57.1 NC_005337.1 + 18659 0.66 0.843542
Target:  5'- gCCGcCGCCGGCggGCGGauCCGaGGGCc- -3'
miRNA:   3'- -GGC-GUGGUCGaaCGCU--GGCaCCUGaa -5'
25877 5' -57.1 NC_005337.1 + 23065 0.69 0.694438
Target:  5'- gCGCGCCGGaacgcgGCGGCCGUGcccGGCa- -3'
miRNA:   3'- gGCGUGGUCgaa---CGCUGGCAC---CUGaa -5'
25877 5' -57.1 NC_005337.1 + 25445 0.67 0.773042
Target:  5'- cCCGCGCgcuuCGGCaccguggacGCGugCGUGGACg- -3'
miRNA:   3'- -GGCGUG----GUCGaa-------CGCugGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 31349 0.67 0.773042
Target:  5'- aCCaGCACCAGCUUGUGGUCGcaGGAg-- -3'
miRNA:   3'- -GG-CGUGGUCGAACGCUGGCa-CCUgaa -5'
25877 5' -57.1 NC_005337.1 + 33085 0.66 0.809591
Target:  5'- aUCGCACCAGCgacGCGGCCcgcugcccuguGUGGu--- -3'
miRNA:   3'- -GGCGUGGUCGaa-CGCUGG-----------CACCugaa -5'
25877 5' -57.1 NC_005337.1 + 33397 0.66 0.818344
Target:  5'- cCCGCGaagUAGCUcugGCGgccGCCGUGGAUg- -3'
miRNA:   3'- -GGCGUg--GUCGAa--CGC---UGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 35687 0.69 0.663837
Target:  5'- gCCGCcuucgACCGGCUgGCGAgCGcGGGCUc -3'
miRNA:   3'- -GGCG-----UGGUCGAaCGCUgGCaCCUGAa -5'
25877 5' -57.1 NC_005337.1 + 36055 0.7 0.622711
Target:  5'- gUCGUGCCagucgcGGCUUGUGACCGUGuccGACg- -3'
miRNA:   3'- -GGCGUGG------UCGAACGCUGGCAC---CUGaa -5'
25877 5' -57.1 NC_005337.1 + 39521 0.72 0.492142
Target:  5'- aCCGCggGCCAGCUcGCGGUCGUGG-CUg -3'
miRNA:   3'- -GGCG--UGGUCGAaCGCUGGCACCuGAa -5'
25877 5' -57.1 NC_005337.1 + 39647 0.66 0.835327
Target:  5'- aCGCAgCGGC--GCGGCCGcgugGGGCg- -3'
miRNA:   3'- gGCGUgGUCGaaCGCUGGCa---CCUGaa -5'
25877 5' -57.1 NC_005337.1 + 45180 0.66 0.835327
Target:  5'- gCGUACCGGCUggccGUGcCCG-GGGCg- -3'
miRNA:   3'- gGCGUGGUCGAa---CGCuGGCaCCUGaa -5'
25877 5' -57.1 NC_005337.1 + 50958 0.68 0.724565
Target:  5'- gCCGCGCCccuAGCcgGuCGACCGggcgGGGCg- -3'
miRNA:   3'- -GGCGUGG---UCGaaC-GCUGGCa---CCUGaa -5'
25877 5' -57.1 NC_005337.1 + 52372 0.72 0.473069
Target:  5'- gCCGCugaCGGC-UGCGggGCCGUGGACg- -3'
miRNA:   3'- -GGCGug-GUCGaACGC--UGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 53015 0.66 0.809591
Target:  5'- cCCGC-CCGGC-UGCGGCuCGUG-ACg- -3'
miRNA:   3'- -GGCGuGGUCGaACGCUG-GCACcUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.