miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25877 5' -57.1 NC_005337.1 + 126048 0.67 0.790692
Target:  5'- gCGCGCCGGUgcggacgcgacccUUGcCGACC-UGGACg- -3'
miRNA:   3'- gGCGUGGUCG-------------AAC-GCUGGcACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 10567 0.69 0.663837
Target:  5'- uCCGCAcgggcgugcCCAGCcgccgcacgGCGuCCGUGGACa- -3'
miRNA:   3'- -GGCGU---------GGUCGaa-------CGCuGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 23065 0.69 0.694438
Target:  5'- gCGCGCCGGaacgcgGCGGCCGUGcccGGCa- -3'
miRNA:   3'- gGCGUGGUCgaa---CGCUGGCAC---CUGaa -5'
25877 5' -57.1 NC_005337.1 + 17579 0.68 0.704545
Target:  5'- gCCGCGCCA--UUGCGGCCGgcucgcccgcGGGCg- -3'
miRNA:   3'- -GGCGUGGUcgAACGCUGGCa---------CCUGaa -5'
25877 5' -57.1 NC_005337.1 + 60946 0.68 0.714591
Target:  5'- gCCGCGCCGGCaUGCG-CaugGGGCg- -3'
miRNA:   3'- -GGCGUGGUCGaACGCuGgcaCCUGaa -5'
25877 5' -57.1 NC_005337.1 + 68287 0.68 0.724565
Target:  5'- uCUGCgGCCGGCcgGCGG-CGUGGACg- -3'
miRNA:   3'- -GGCG-UGGUCGaaCGCUgGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 76037 0.67 0.753968
Target:  5'- gCCGCGCCGGaCUUGCGcuccaugaccGCCGcGcGGCg- -3'
miRNA:   3'- -GGCGUGGUC-GAACGC----------UGGCaC-CUGaa -5'
25877 5' -57.1 NC_005337.1 + 31349 0.67 0.773042
Target:  5'- aCCaGCACCAGCUUGUGGUCGcaGGAg-- -3'
miRNA:   3'- -GG-CGUGGUCGAACGCUGGCa-CCUgaa -5'
25877 5' -57.1 NC_005337.1 + 129589 0.67 0.782393
Target:  5'- gCUGCucaaguCCGcGCgaGCGACCGUGGAg-- -3'
miRNA:   3'- -GGCGu-----GGU-CGaaCGCUGGCACCUgaa -5'
25877 5' -57.1 NC_005337.1 + 120380 0.7 0.622711
Target:  5'- gCGCcuGCCGGCUcgUGCGGCaCGUGGuCg- -3'
miRNA:   3'- gGCG--UGGUCGA--ACGCUG-GCACCuGaa -5'
25877 5' -57.1 NC_005337.1 + 98764 0.7 0.622711
Target:  5'- cUCGuCACCGGCa-GCG-CCGUGGACc- -3'
miRNA:   3'- -GGC-GUGGUCGaaCGCuGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 127558 0.7 0.61654
Target:  5'- uCCGCGuuguCCGGCUgcugcuggaggcggGCGcaGCCGUGGACg- -3'
miRNA:   3'- -GGCGU----GGUCGAa-------------CGC--UGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 68484 0.75 0.328471
Target:  5'- gCCGCACCGggcgccgcGCUgcugGCGGCCGUGGGu-- -3'
miRNA:   3'- -GGCGUGGU--------CGAa---CGCUGGCACCUgaa -5'
25877 5' -57.1 NC_005337.1 + 115478 0.75 0.351478
Target:  5'- cUCGCACCGGUgcacgcacGgGGCCGUGGACg- -3'
miRNA:   3'- -GGCGUGGUCGaa------CgCUGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 101518 0.72 0.473069
Target:  5'- uCCGCG-CGGCUggaGGCCGUGGACg- -3'
miRNA:   3'- -GGCGUgGUCGAacgCUGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 95613 0.71 0.551294
Target:  5'- gCGCGCCauGGCg-GCGuCCGUGGGCg- -3'
miRNA:   3'- gGCGUGG--UCGaaCGCuGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 59070 0.71 0.561381
Target:  5'- cCUGgGCCGGCagaaGACCGUGGACa- -3'
miRNA:   3'- -GGCgUGGUCGaacgCUGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 95713 0.7 0.591913
Target:  5'- uCCGCGCgCAGCa-GCGACCccGGACg- -3'
miRNA:   3'- -GGCGUG-GUCGaaCGCUGGcaCCUGaa -5'
25877 5' -57.1 NC_005337.1 + 65129 0.7 0.60216
Target:  5'- gUCGCACUGGCcgcgaagGCGgccGCCGUGGACc- -3'
miRNA:   3'- -GGCGUGGUCGaa-----CGC---UGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 115208 0.7 0.612428
Target:  5'- gCCGCACCuGC-UGUGGCCGcGGcACa- -3'
miRNA:   3'- -GGCGUGGuCGaACGCUGGCaCC-UGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.