miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25883 3' -59.2 NC_005337.1 + 13669 0.66 0.778041
Target:  5'- uCUUGCcggccucCUCCAUGAgCGCgaggcagacuaggUGCGCGGu -3'
miRNA:   3'- uGAACGc------GAGGUACUgGCG-------------GCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 13948 0.66 0.751038
Target:  5'- ---cGUGCUCCAUGGgCGa-GgGCGGg -3'
miRNA:   3'- ugaaCGCGAGGUACUgGCggCgCGCC- -5'
25883 3' -59.2 NC_005337.1 + 14416 0.66 0.769765
Target:  5'- uGCUUGcCGCgcgaCGUG-CCGCCGCugGCGc -3'
miRNA:   3'- -UGAAC-GCGag--GUACuGGCGGCG--CGCc -5'
25883 3' -59.2 NC_005337.1 + 14887 0.66 0.731908
Target:  5'- ---cGCGaCUCCAUG-CUGuuGgCGCGGc -3'
miRNA:   3'- ugaaCGC-GAGGUACuGGCggC-GCGCC- -5'
25883 3' -59.2 NC_005337.1 + 16037 0.76 0.236118
Target:  5'- ---cGCGCUgCGgcgccuGCCGCCGCGCGGg -3'
miRNA:   3'- ugaaCGCGAgGUac----UGGCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 17572 0.68 0.66177
Target:  5'- uGCUUGUGCcgcgCCAUugcggccGGCuCGCC-CGCGGg -3'
miRNA:   3'- -UGAACGCGa---GGUA-------CUG-GCGGcGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 18203 0.67 0.705564
Target:  5'- ---aGCGCUCCgugcagagcccguccGUGAacgcguugaucacCUGCCGCGCGa -3'
miRNA:   3'- ugaaCGCGAGG---------------UACU-------------GGCGGCGCGCc -5'
25883 3' -59.2 NC_005337.1 + 18850 0.66 0.778954
Target:  5'- ---aGCGaCUCCcgGACgGCCG-GCGa -3'
miRNA:   3'- ugaaCGC-GAGGuaCUGgCGGCgCGCc -5'
25883 3' -59.2 NC_005337.1 + 20148 0.69 0.5527
Target:  5'- ---cGCGCUCCAc-GCUGCCGCaggccgcgGCGGa -3'
miRNA:   3'- ugaaCGCGAGGUacUGGCGGCG--------CGCC- -5'
25883 3' -59.2 NC_005337.1 + 21913 0.71 0.485373
Target:  5'- ---cGCGCUUCAUGGaggUgGCCGCGCGc -3'
miRNA:   3'- ugaaCGCGAGGUACU---GgCGGCGCGCc -5'
25883 3' -59.2 NC_005337.1 + 22036 0.67 0.692713
Target:  5'- cGCccgGCuGUUCCGgaaGACCGaguuCCGCGCGGu -3'
miRNA:   3'- -UGaa-CG-CGAGGUa--CUGGC----GGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 23020 0.7 0.546802
Target:  5'- cACUUGCGCcgcgucgaggacgugUCCucguucGUGACgcaCGCCGCGCGc -3'
miRNA:   3'- -UGAACGCG---------------AGG------UACUG---GCGGCGCGCc -5'
25883 3' -59.2 NC_005337.1 + 23714 0.76 0.253515
Target:  5'- gGCUcGCGgacaUCC-UGACCGCCGCcGCGGa -3'
miRNA:   3'- -UGAaCGCg---AGGuACUGGCGGCG-CGCC- -5'
25883 3' -59.2 NC_005337.1 + 24972 0.66 0.778954
Target:  5'- uGCguggUGCGCUUCuucGGCUGCaaCGCGCGc -3'
miRNA:   3'- -UGa---ACGCGAGGua-CUGGCG--GCGCGCc -5'
25883 3' -59.2 NC_005337.1 + 25084 0.68 0.652735
Target:  5'- aGC-UGCGCgacgCCGagcuCCGcCCGCGCGGc -3'
miRNA:   3'- -UGaACGCGa---GGUacu-GGC-GGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 28464 0.71 0.485373
Target:  5'- uACUUGUcgaGCUCC-UGgagcacggauGCgGCCGCGCGGc -3'
miRNA:   3'- -UGAACG---CGAGGuAC----------UGgCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 28755 0.68 0.64268
Target:  5'- ---cGCG-UCCAUGGCgGCCGCGauGa -3'
miRNA:   3'- ugaaCGCgAGGUACUGgCGGCGCgcC- -5'
25883 3' -59.2 NC_005337.1 + 29189 0.67 0.719289
Target:  5'- cGCggcgGCGC-CCGUGccgaaggaggcgcuGCgcagCGCCGCGCGGc -3'
miRNA:   3'- -UGaa--CGCGaGGUAC--------------UG----GCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 29535 0.74 0.319124
Target:  5'- ---cGCGCUCCAucucgccgaucuUGauGCCGCCGCcGCGGc -3'
miRNA:   3'- ugaaCGCGAGGU------------AC--UGGCGGCG-CGCC- -5'
25883 3' -59.2 NC_005337.1 + 29813 0.68 0.621549
Target:  5'- ---cGUGCUCCgcguacuGUGugUGCUGCGCGu -3'
miRNA:   3'- ugaaCGCGAGG-------UACugGCGGCGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.