miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25883 3' -59.2 NC_005337.1 + 527 0.68 0.652735
Target:  5'- gGCgcagGCGCUCCA--GCUGCCgGCGCc- -3'
miRNA:   3'- -UGaa--CGCGAGGUacUGGCGG-CGCGcc -5'
25883 3' -59.2 NC_005337.1 + 527 0.68 0.652735
Target:  5'- gGCgcagGCGCUCCA--GCUGCCgGCGCc- -3'
miRNA:   3'- -UGaa--CGCGAGGUacUGGCGG-CGCGcc -5'
25883 3' -59.2 NC_005337.1 + 568 0.67 0.722212
Target:  5'- ---cGCGCguaCGccGCgGCCGCGCGGa -3'
miRNA:   3'- ugaaCGCGag-GUacUGgCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 568 0.67 0.722212
Target:  5'- ---cGCGCguaCGccGCgGCCGCGCGGa -3'
miRNA:   3'- ugaaCGCGag-GUacUGgCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 1643 0.67 0.692713
Target:  5'- --aUGCGCgcgcCCGcggcgacgagcuUGGCCGCCGcCGCGu -3'
miRNA:   3'- ugaACGCGa---GGU------------ACUGGCGGC-GCGCc -5'
25883 3' -59.2 NC_005337.1 + 2208 0.7 0.504245
Target:  5'- cGCggGCGCggCCcgGGCCGCgaGCGCGc -3'
miRNA:   3'- -UGaaCGCGa-GGuaCUGGCGg-CGCGCc -5'
25883 3' -59.2 NC_005337.1 + 2572 0.76 0.259544
Target:  5'- ---aGCGCggacUCCAUGGCgGCCaGCGCGGu -3'
miRNA:   3'- ugaaCGCG----AGGUACUGgCGG-CGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 4674 0.67 0.712443
Target:  5'- gACga--GCUCCAcGGUCGCuCGCGCGGa -3'
miRNA:   3'- -UGaacgCGAGGUaCUGGCG-GCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 5613 0.66 0.760456
Target:  5'- gACgaGCGuCUCgGUgcacGACCgGCCGCGCaGGa -3'
miRNA:   3'- -UGaaCGC-GAGgUA----CUGG-CGGCGCG-CC- -5'
25883 3' -59.2 NC_005337.1 + 5821 0.67 0.690728
Target:  5'- cGCaaGCGCUgCAgaggucguacccGGCCGCC-CGCGGg -3'
miRNA:   3'- -UGaaCGCGAgGUa-----------CUGGCGGcGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 5995 0.71 0.476065
Target:  5'- cGCgcGCGUUgCA-GACCGCCGCGUGc -3'
miRNA:   3'- -UGaaCGCGAgGUaCUGGCGGCGCGCc -5'
25883 3' -59.2 NC_005337.1 + 6627 0.7 0.542882
Target:  5'- ---gGCGCcggcacgCCGcaggguugaaGACCGCCGCGCGGu -3'
miRNA:   3'- ugaaCGCGa------GGUa---------CUGGCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 6881 0.75 0.29145
Target:  5'- aGCgUGCGCccgUCCAUGuCgCGCgCGCGCGGg -3'
miRNA:   3'- -UGaACGCG---AGGUACuG-GCG-GCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 7857 0.68 0.662773
Target:  5'- ---cGCGCgCCGUcGCgCGCCGgGCGGc -3'
miRNA:   3'- ugaaCGCGaGGUAcUG-GCGGCgCGCC- -5'
25883 3' -59.2 NC_005337.1 + 9949 0.67 0.692713
Target:  5'- ---cGCGCcgcgUCCAUGAgCGCCuGCGCc- -3'
miRNA:   3'- ugaaCGCG----AGGUACUgGCGG-CGCGcc -5'
25883 3' -59.2 NC_005337.1 + 10226 0.66 0.778954
Target:  5'- ---gGCaGCUCCA--GCCGCggcaggCGCGCGGc -3'
miRNA:   3'- ugaaCG-CGAGGUacUGGCG------GCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 10258 0.69 0.602457
Target:  5'- cGCgggGCGcCUCCAUcGGCgGCgGCGCGu -3'
miRNA:   3'- -UGaa-CGC-GAGGUA-CUGgCGgCGCGCc -5'
25883 3' -59.2 NC_005337.1 + 10341 0.7 0.494768
Target:  5'- aGCUgcaCGCggCCGUcGCCGCCGCaGCGGu -3'
miRNA:   3'- -UGAac-GCGa-GGUAcUGGCGGCG-CGCC- -5'
25883 3' -59.2 NC_005337.1 + 10419 0.67 0.692713
Target:  5'- gGC-UGCGC-CCAggagGA-CGCCuGCGCGGc -3'
miRNA:   3'- -UGaACGCGaGGUa---CUgGCGG-CGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 11473 0.66 0.741519
Target:  5'- cGC-UGCGgUCgAUGGCCGC-GCGCa- -3'
miRNA:   3'- -UGaACGCgAGgUACUGGCGgCGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.