miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25883 3' -59.2 NC_005337.1 + 88857 0.7 0.494768
Target:  5'- aGC-UGCGCUCCGa---CGCCGCGCa- -3'
miRNA:   3'- -UGaACGCGAGGUacugGCGGCGCGcc -5'
25883 3' -59.2 NC_005337.1 + 131862 0.71 0.438871
Target:  5'- uGCUcGCGCUCCAcgugcGACCGCUuccgccuGCGCGu -3'
miRNA:   3'- -UGAaCGCGAGGUa----CUGGCGG-------CGCGCc -5'
25883 3' -59.2 NC_005337.1 + 40050 0.71 0.448689
Target:  5'- cGCggUGCGCcgaaCCGggGACCGguaCCGCGCGGa -3'
miRNA:   3'- -UGa-ACGCGa---GGUa-CUGGC---GGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 133508 0.71 0.465928
Target:  5'- ---gGCGCgcagCaCAUGGCCGCCGUcgaggccGCGGg -3'
miRNA:   3'- ugaaCGCGa---G-GUACUGGCGGCG-------CGCC- -5'
25883 3' -59.2 NC_005337.1 + 45773 0.71 0.470522
Target:  5'- cGCgcgGCGCugUCCAUGACgGCagacagcuuggcgaGCGCGGa -3'
miRNA:   3'- -UGaa-CGCG--AGGUACUGgCGg-------------CGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 74544 0.71 0.476065
Target:  5'- ---cGCGCUCCgccgcgcggcgcGUGAUgcugGCCGCGCGGc -3'
miRNA:   3'- ugaaCGCGAGG------------UACUGg---CGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 21913 0.71 0.485373
Target:  5'- ---cGCGCUUCAUGGaggUgGCCGCGCGc -3'
miRNA:   3'- ugaaCGCGAGGUACU---GgCGGCGCGCc -5'
25883 3' -59.2 NC_005337.1 + 28464 0.71 0.485373
Target:  5'- uACUUGUcgaGCUCC-UGgagcacggauGCgGCCGCGCGGc -3'
miRNA:   3'- -UGAACG---CGAGGuAC----------UGgCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 10341 0.7 0.494768
Target:  5'- aGCUgcaCGCggCCGUcGCCGCCGCaGCGGu -3'
miRNA:   3'- -UGAac-GCGa-GGUAcUGGCGGCG-CGCC- -5'
25883 3' -59.2 NC_005337.1 + 98849 0.71 0.437099
Target:  5'- cGCgccgUGCGCgUCCAUcGagcaguacuaccgcGCCGCgCGCGCGGa -3'
miRNA:   3'- -UGa---ACGCG-AGGUA-C--------------UGGCG-GCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 71510 0.72 0.43093
Target:  5'- gACUUcGCGUUCC---ACCGCCGCgucGCGGa -3'
miRNA:   3'- -UGAA-CGCGAGGuacUGGCGGCG---CGCC- -5'
25883 3' -59.2 NC_005337.1 + 109241 0.72 0.422206
Target:  5'- ---aGCaGCUCCucgGUGuCCGCCGCGCGc -3'
miRNA:   3'- ugaaCG-CGAGG---UACuGGCGGCGCGCc -5'
25883 3' -59.2 NC_005337.1 + 125624 0.77 0.204329
Target:  5'- --gUGCGgaCCAUGAUCGCCcucgGCGCGGa -3'
miRNA:   3'- ugaACGCgaGGUACUGGCGG----CGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 16037 0.76 0.236118
Target:  5'- ---cGCGCUgCGgcgccuGCCGCCGCGCGGg -3'
miRNA:   3'- ugaaCGCGAgGUac----UGGCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 2572 0.76 0.259544
Target:  5'- ---aGCGCggacUCCAUGGCgGCCaGCGCGGu -3'
miRNA:   3'- ugaaCGCG----AGGUACUGgCGG-CGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 69468 0.76 0.259544
Target:  5'- cCUggGUGUUCCGgcgucguGCCGCCGCGCGGa -3'
miRNA:   3'- uGAa-CGCGAGGUac-----UGGCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 6881 0.75 0.29145
Target:  5'- aGCgUGCGCccgUCCAUGuCgCGCgCGCGCGGg -3'
miRNA:   3'- -UGaACGCG---AGGUACuG-GCG-GCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 87776 0.72 0.396686
Target:  5'- aACUccgGCGCcgCgGUGuCgGCCGCGCGGg -3'
miRNA:   3'- -UGAa--CGCGa-GgUACuGgCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 122278 0.72 0.396686
Target:  5'- aACaUGCGCg-CGcUGACCGCCGCGCu- -3'
miRNA:   3'- -UGaACGCGagGU-ACUGGCGGCGCGcc -5'
25883 3' -59.2 NC_005337.1 + 31931 0.72 0.422206
Target:  5'- cUUUGCGCUCCAccagguucucggUGGCCuCCaCGCGGa -3'
miRNA:   3'- uGAACGCGAGGU------------ACUGGcGGcGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.