Results 1 - 20 of 199 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 76046 | 1.09 | 0.001371 |
Target: 5'- gACUUGCGCUCCAUGACCGCCGCGCGGc -3' miRNA: 3'- -UGAACGCGAGGUACUGGCGGCGCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 125624 | 0.77 | 0.204329 |
Target: 5'- --gUGCGgaCCAUGAUCGCCcucgGCGCGGa -3' miRNA: 3'- ugaACGCgaGGUACUGGCGG----CGCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 16037 | 0.76 | 0.236118 |
Target: 5'- ---cGCGCUgCGgcgccuGCCGCCGCGCGGg -3' miRNA: 3'- ugaaCGCGAgGUac----UGGCGGCGCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 23714 | 0.76 | 0.253515 |
Target: 5'- gGCUcGCGgacaUCC-UGACCGCCGCcGCGGa -3' miRNA: 3'- -UGAaCGCg---AGGuACUGGCGGCG-CGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 2572 | 0.76 | 0.259544 |
Target: 5'- ---aGCGCggacUCCAUGGCgGCCaGCGCGGu -3' miRNA: 3'- ugaaCGCG----AGGUACUGgCGG-CGCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 69468 | 0.76 | 0.259544 |
Target: 5'- cCUggGUGUUCCGgcgucguGCCGCCGCGCGGa -3' miRNA: 3'- uGAa-CGCGAGGUac-----UGGCGGCGCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 6881 | 0.75 | 0.29145 |
Target: 5'- aGCgUGCGCccgUCCAUGuCgCGCgCGCGCGGg -3' miRNA: 3'- -UGaACGCG---AGGUACuG-GCG-GCGCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 29535 | 0.74 | 0.319124 |
Target: 5'- ---cGCGCUCCAucucgccgaucuUGauGCCGCCGCcGCGGc -3' miRNA: 3'- ugaaCGCGAGGU------------AC--UGGCGGCG-CGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 62945 | 0.73 | 0.341145 |
Target: 5'- -gUUGUGCaCC---GCCGCCGCGCGGg -3' miRNA: 3'- ugAACGCGaGGuacUGGCGGCGCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 122278 | 0.72 | 0.396686 |
Target: 5'- aACaUGCGCg-CGcUGACCGCCGCGCu- -3' miRNA: 3'- -UGaACGCGagGU-ACUGGCGGCGCGcc -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 87776 | 0.72 | 0.396686 |
Target: 5'- aACUccgGCGCcgCgGUGuCgGCCGCGCGGg -3' miRNA: 3'- -UGAa--CGCGa-GgUACuGgCGGCGCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 65318 | 0.72 | 0.41359 |
Target: 5'- gACUggaaGgGCacgCCGguGCCGCCGCGCGGg -3' miRNA: 3'- -UGAa---CgCGa--GGUacUGGCGGCGCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 31931 | 0.72 | 0.422206 |
Target: 5'- cUUUGCGCUCCAccagguucucggUGGCCuCCaCGCGGa -3' miRNA: 3'- uGAACGCGAGGU------------ACUGGcGGcGCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 109241 | 0.72 | 0.422206 |
Target: 5'- ---aGCaGCUCCucgGUGuCCGCCGCGCGc -3' miRNA: 3'- ugaaCG-CGAGG---UACuGGCGGCGCGCc -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 30633 | 0.72 | 0.422206 |
Target: 5'- gGCcUGCGCgcagCCGaggaUGGCgCGCgGCGCGGa -3' miRNA: 3'- -UGaACGCGa---GGU----ACUG-GCGgCGCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 65771 | 0.72 | 0.422206 |
Target: 5'- cGCggGCGCacCCAcGGCCGCCagcaGCGCGGc -3' miRNA: 3'- -UGaaCGCGa-GGUaCUGGCGG----CGCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 85394 | 0.72 | 0.43093 |
Target: 5'- --gUGCGUggUC-UGGCCGCCGgGCGGg -3' miRNA: 3'- ugaACGCGa-GGuACUGGCGGCgCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 71510 | 0.72 | 0.43093 |
Target: 5'- gACUUcGCGUUCC---ACCGCCGCgucGCGGa -3' miRNA: 3'- -UGAA-CGCGAGGuacUGGCGGCG---CGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 98849 | 0.71 | 0.437099 |
Target: 5'- cGCgccgUGCGCgUCCAUcGagcaguacuaccgcGCCGCgCGCGCGGa -3' miRNA: 3'- -UGa---ACGCG-AGGUA-C--------------UGGCG-GCGCGCC- -5' |
|||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 131862 | 0.71 | 0.438871 |
Target: 5'- uGCUcGCGCUCCAcgugcGACCGCUuccgccuGCGCGu -3' miRNA: 3'- -UGAaCGCGAGGUa----CUGGCGG-------CGCGCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home