Results 1 - 20 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25883 | 3' | -59.2 | NC_005337.1 | + | 13948 | 0.66 | 0.751038 |
Target: 5'- ---cGUGCUCCAUGGgCGa-GgGCGGg -3' miRNA: 3'- ugaaCGCGAGGUACUgGCggCgCGCC- -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 97975 | 0.66 | 0.766055 |
Target: 5'- --gUGCGCgccauccgcgacaCCGUGGCCGCguuCGCGCa- -3' miRNA: 3'- ugaACGCGa------------GGUACUGGCG---GCGCGcc -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 133109 | 0.66 | 0.768839 |
Target: 5'- --gUGCGCUCCGUGAacacaucgaGCUGUgauccccGCGGa -3' miRNA: 3'- ugaACGCGAGGUACUgg-------CGGCG-------CGCC- -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 11473 | 0.66 | 0.741519 |
Target: 5'- cGC-UGCGgUCgAUGGCCGC-GCGCa- -3' miRNA: 3'- -UGaACGCgAGgUACUGGCGgCGCGcc -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 77001 | 0.66 | 0.751038 |
Target: 5'- ---cGCGCgcgCC--GGCC-CCGCGCGGc -3' miRNA: 3'- ugaaCGCGa--GGuaCUGGcGGCGCGCC- -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 45834 | 0.66 | 0.731908 |
Target: 5'- ---cGUGUUCCGcGACCGgCGCguccGCGGg -3' miRNA: 3'- ugaaCGCGAGGUaCUGGCgGCG----CGCC- -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 51636 | 0.66 | 0.760456 |
Target: 5'- aGCUgcggucgGCGCUCCGcGGUCGCCaGCGCc- -3' miRNA: 3'- -UGAa------CGCGAGGUaCUGGCGG-CGCGcc -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 58213 | 0.66 | 0.778954 |
Target: 5'- ----cCGCggCGU-ACCGCCGCGCGGc -3' miRNA: 3'- ugaacGCGagGUAcUGGCGGCGCGCC- -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 96864 | 0.66 | 0.760456 |
Target: 5'- -----gGCUCCGcGACU-CCGCGCGGa -3' miRNA: 3'- ugaacgCGAGGUaCUGGcGGCGCGCC- -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 89782 | 0.66 | 0.731908 |
Target: 5'- --aUGCGCUCCGUcguguacACCGaCUGCGUGa -3' miRNA: 3'- ugaACGCGAGGUAc------UGGC-GGCGCGCc -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 67352 | 0.66 | 0.768839 |
Target: 5'- cACgaugGCGCagcCCAUGACCgaguacaucgugcGCCGCGaGGa -3' miRNA: 3'- -UGaa--CGCGa--GGUACUGG-------------CGGCGCgCC- -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 101442 | 0.66 | 0.751038 |
Target: 5'- gGCggUGCGCUCCAccgaggagGGgCGCgagUGCGUGGa -3' miRNA: 3'- -UGa-ACGCGAGGUa-------CUgGCG---GCGCGCC- -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 132914 | 0.66 | 0.751038 |
Target: 5'- ---cGCGCUCagAUGACgCGa-GCGCGGa -3' miRNA: 3'- ugaaCGCGAGg-UACUG-GCggCGCGCC- -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 62525 | 0.66 | 0.751038 |
Target: 5'- --aUGCGCUcgcCCAccgacaggcUGACCGUCGCGUc- -3' miRNA: 3'- ugaACGCGA---GGU---------ACUGGCGGCGCGcc -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 119832 | 0.66 | 0.760456 |
Target: 5'- aGCgcgGCGCUcgguacccggcgCCAgcggcGGCaCGUCGCGCGGc -3' miRNA: 3'- -UGaa-CGCGA------------GGUa----CUG-GCGGCGCGCC- -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 56498 | 0.66 | 0.760456 |
Target: 5'- ---cGCGCUCCccaacuCCGCggaccccgaggCGCGCGGg -3' miRNA: 3'- ugaaCGCGAGGuacu--GGCG-----------GCGCGCC- -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 34407 | 0.66 | 0.741519 |
Target: 5'- ---gGUGCUCCAgggcaggcccGACCGCCuG-GCGGg -3' miRNA: 3'- ugaaCGCGAGGUa---------CUGGCGG-CgCGCC- -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 44200 | 0.66 | 0.741519 |
Target: 5'- ---cGCGCgcaaugcgUC-UGGCCGCCGCggaGCGGg -3' miRNA: 3'- ugaaCGCGa-------GGuACUGGCGGCG---CGCC- -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 49435 | 0.66 | 0.731908 |
Target: 5'- ---gGUGCUCCGaaacgcGGCCGCgUGCGCGa -3' miRNA: 3'- ugaaCGCGAGGUa-----CUGGCG-GCGCGCc -5' |
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25883 | 3' | -59.2 | NC_005337.1 | + | 71272 | 0.66 | 0.760456 |
Target: 5'- ---cGCGCU-CAUG--CGCCGCGUGGc -3' miRNA: 3'- ugaaCGCGAgGUACugGCGGCGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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