miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25883 5' -54.6 NC_005337.1 + 132970 0.66 0.920584
Target:  5'- --gUGCaccUGGUGGUCGUgaccGUCCACGa- -3'
miRNA:   3'- cagACGa--ACCGCCAGUA----CAGGUGCau -5'
25883 5' -54.6 NC_005337.1 + 69118 0.66 0.914682
Target:  5'- cGUCUGCg-GGCGaGcCGcgGUCCACGg- -3'
miRNA:   3'- -CAGACGaaCCGC-CaGUa-CAGGUGCau -5'
25883 5' -54.6 NC_005337.1 + 125077 0.66 0.914682
Target:  5'- uUUUGCUUGGuCGGUCgcccGUGgugCCAUGg- -3'
miRNA:   3'- cAGACGAACC-GCCAG----UACa--GGUGCau -5'
25883 5' -54.6 NC_005337.1 + 130508 0.66 0.908528
Target:  5'- -cCUGCUcgUGGgaGGUCAUGgaguUCCugGUGc -3'
miRNA:   3'- caGACGA--ACCg-CCAGUAC----AGGugCAU- -5'
25883 5' -54.6 NC_005337.1 + 40123 0.66 0.908528
Target:  5'- -gUUGCUcaccgUGGUGGUCAUcUCCAuCGUGu -3'
miRNA:   3'- caGACGA-----ACCGCCAGUAcAGGU-GCAU- -5'
25883 5' -54.6 NC_005337.1 + 125416 0.66 0.908528
Target:  5'- cGUCaUGCacGGCGGcgUCAggGUCCGCGa- -3'
miRNA:   3'- -CAG-ACGaaCCGCC--AGUa-CAGGUGCau -5'
25883 5' -54.6 NC_005337.1 + 9529 0.66 0.908528
Target:  5'- ---cGgUUGGCGGUCucgAUGUCCACc-- -3'
miRNA:   3'- cagaCgAACCGCCAG---UACAGGUGcau -5'
25883 5' -54.6 NC_005337.1 + 128490 0.67 0.888571
Target:  5'- -cCUGCg-GGCGGUCggcgagugGUGUUCACGg- -3'
miRNA:   3'- caGACGaaCCGCCAG--------UACAGGUGCau -5'
25883 5' -54.6 NC_005337.1 + 87003 0.67 0.874057
Target:  5'- uGUC-GCUgaccuUGGUCAUGUCCGCGUc -3'
miRNA:   3'- -CAGaCGAacc--GCCAGUACAGGUGCAu -5'
25883 5' -54.6 NC_005337.1 + 14788 0.67 0.858622
Target:  5'- uGUCUGCUggGcGCGGUguUGUUCuCGUGc -3'
miRNA:   3'- -CAGACGAa-C-CGCCAguACAGGuGCAU- -5'
25883 5' -54.6 NC_005337.1 + 31821 0.67 0.858622
Target:  5'- uUCUGCUUGGCGuGcUCGg--CCGCGa- -3'
miRNA:   3'- cAGACGAACCGC-C-AGUacaGGUGCau -5'
25883 5' -54.6 NC_005337.1 + 14535 0.68 0.825198
Target:  5'- -gCUGC-UGGCGcacCAUGUCCGCGa- -3'
miRNA:   3'- caGACGaACCGCca-GUACAGGUGCau -5'
25883 5' -54.6 NC_005337.1 + 58249 0.68 0.825198
Target:  5'- aGUCcgGCgcGGCGGUCu--UCCGCGUGu -3'
miRNA:   3'- -CAGa-CGaaCCGCCAGuacAGGUGCAU- -5'
25883 5' -54.6 NC_005337.1 + 57142 0.68 0.813666
Target:  5'- -gCUGCUcggcGGCGGcacgcccgucggaaUCAUGUCCGCGc- -3'
miRNA:   3'- caGACGAa---CCGCC--------------AGUACAGGUGCau -5'
25883 5' -54.6 NC_005337.1 + 75621 0.68 0.807332
Target:  5'- ---aGCUUGGCGcG-CGUGUcCCGCGUGc -3'
miRNA:   3'- cagaCGAACCGC-CaGUACA-GGUGCAU- -5'
25883 5' -54.6 NC_005337.1 + 91158 0.69 0.78879
Target:  5'- ---aGCUcacguUGGCGGagAUGUCCACGa- -3'
miRNA:   3'- cagaCGA-----ACCGCCagUACAGGUGCau -5'
25883 5' -54.6 NC_005337.1 + 64424 0.69 0.78879
Target:  5'- ---cGCUUGGCGGccaccagCGUGUCCAgUGUGg -3'
miRNA:   3'- cagaCGAACCGCCa------GUACAGGU-GCAU- -5'
25883 5' -54.6 NC_005337.1 + 80410 0.7 0.729877
Target:  5'- uGUCUGCUcgcggUGGCgucgcuGGUCGUGcCCGCGc- -3'
miRNA:   3'- -CAGACGA-----ACCG------CCAGUACaGGUGCau -5'
25883 5' -54.6 NC_005337.1 + 81273 0.72 0.593922
Target:  5'- ---aGCcgGGCGGgCGUGUCCGCGUAc -3'
miRNA:   3'- cagaCGaaCCGCCaGUACAGGUGCAU- -5'
25883 5' -54.6 NC_005337.1 + 32736 0.74 0.511438
Target:  5'- aGUCcacGCUggcGGCGGUCAcGUCCACGg- -3'
miRNA:   3'- -CAGa--CGAa--CCGCCAGUaCAGGUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.