miRNA display CGI


Results 21 - 40 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25897 3' -65.5 NC_005337.1 + 96960 0.66 0.44668
Target:  5'- uCGCCGCGCGCGaCCagcuccucgcGGC-CGgGCGGu- -3'
miRNA:   3'- -GCGGUGCGCGC-GG----------CCGcGCgCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 52151 0.66 0.4817
Target:  5'- uGUCGCGCgcucauGCGCCaGCGCggcuucgacgGCGCGcAGAc -3'
miRNA:   3'- gCGGUGCG------CGCGGcCGCG----------CGCGC-UCU- -5'
25897 3' -65.5 NC_005337.1 + 95615 0.66 0.4817
Target:  5'- gCGCCAUgGCgGCGUCcGUGgGCGCGGGc -3'
miRNA:   3'- -GCGGUG-CG-CGCGGcCGCgCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 50180 0.66 0.455305
Target:  5'- gCGaCCGCGCccguguccGCGCucugCGGCGCGCGUcugcacacgGGGAa -3'
miRNA:   3'- -GC-GGUGCG--------CGCG----GCCGCGCGCG---------CUCU- -5'
25897 3' -65.5 NC_005337.1 + 56634 0.66 0.44668
Target:  5'- uCGCgCACGgGCacGCUGGCGCGCaagGUGAu- -3'
miRNA:   3'- -GCG-GUGCgCG--CGGCCGCGCG---CGCUcu -5'
25897 3' -65.5 NC_005337.1 + 115432 0.66 0.4817
Target:  5'- uGCgGCGCGUGCUGGCGauagaGCcgGCGuacGAc -3'
miRNA:   3'- gCGgUGCGCGCGGCCGCg----CG--CGCu--CU- -5'
25897 3' -65.5 NC_005337.1 + 48400 0.66 0.463143
Target:  5'- aGCCGCGCacggagacgcucgGCGUacUGGCGCuGUGCGuGGu -3'
miRNA:   3'- gCGGUGCG-------------CGCG--GCCGCG-CGCGCuCU- -5'
25897 3' -65.5 NC_005337.1 + 97769 0.66 0.464018
Target:  5'- -aUCACGCGCGC--GC-UGCGCGAGAa -3'
miRNA:   3'- gcGGUGCGCGCGgcCGcGCGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 64247 0.66 0.455305
Target:  5'- uGCgGCGCuGCGgCGGCucugggacccggGCGCGCcGGAg -3'
miRNA:   3'- gCGgUGCG-CGCgGCCG------------CGCGCGcUCU- -5'
25897 3' -65.5 NC_005337.1 + 49534 0.66 0.44668
Target:  5'- uCGCgCGCGCGCGggagaccagcuCCGGCGC-CGgGAa- -3'
miRNA:   3'- -GCG-GUGCGCGC-----------GGCCGCGcGCgCUcu -5'
25897 3' -65.5 NC_005337.1 + 91508 0.66 0.455305
Target:  5'- uCGUagGCG-GCGUCGaaGCGgGCGCGAGAg -3'
miRNA:   3'- -GCGg-UGCgCGCGGC--CGCgCGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 95336 0.66 0.4817
Target:  5'- gCGCguCGCaguaGCGCCGGaGCGC-CGAGu -3'
miRNA:   3'- -GCGguGCG----CGCGGCCgCGCGcGCUCu -5'
25897 3' -65.5 NC_005337.1 + 64940 0.66 0.4817
Target:  5'- ---aGCGCGCGCCGugauccGCGUGUGCaAGAa -3'
miRNA:   3'- gcggUGCGCGCGGC------CGCGCGCGcUCU- -5'
25897 3' -65.5 NC_005337.1 + 90943 0.66 0.44668
Target:  5'- gGCCA-GCGCGUCGGCGaGCccCGAGc -3'
miRNA:   3'- gCGGUgCGCGCGGCCGCgCGc-GCUCu -5'
25897 3' -65.5 NC_005337.1 + 32263 0.66 0.479027
Target:  5'- aCGCC-CGCGCGCUgcacgauguacucgGGCGUGaacucgGcCGAGAg -3'
miRNA:   3'- -GCGGuGCGCGCGG--------------CCGCGCg-----C-GCUCU- -5'
25897 3' -65.5 NC_005337.1 + 20776 0.66 0.464018
Target:  5'- gGCCACGCGCuucGCgGGgacggGCGUGCcGGAg -3'
miRNA:   3'- gCGGUGCGCG---CGgCCg----CGCGCGcUCU- -5'
25897 3' -65.5 NC_005337.1 + 15001 0.66 0.444111
Target:  5'- aGCUugGUGaGCCGGCGCcgcaguuuguucauGUGCGAc- -3'
miRNA:   3'- gCGGugCGCgCGGCCGCG--------------CGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 133368 0.66 0.472817
Target:  5'- cCGCCGC-CGCGCuCGuCGCGCuCGGGc -3'
miRNA:   3'- -GCGGUGcGCGCG-GCcGCGCGcGCUCu -5'
25897 3' -65.5 NC_005337.1 + 129784 0.66 0.476361
Target:  5'- aCGCCGCugcaCGUGCUGGCGaugcagagcaccugcCGCGCGucGAu -3'
miRNA:   3'- -GCGGUGc---GCGCGGCCGC---------------GCGCGCu-CU- -5'
25897 3' -65.5 NC_005337.1 + 60874 0.66 0.452708
Target:  5'- -uCCgACGCGCGuCCGGCGUuucgucgggcguguGUGCGGGc -3'
miRNA:   3'- gcGG-UGCGCGC-GGCCGCG--------------CGCGCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.