miRNA display CGI


Results 1 - 20 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25897 3' -65.5 NC_005337.1 + 15001 0.66 0.444111
Target:  5'- aGCUugGUGaGCCGGCGCcgcaguuuguucauGUGCGAc- -3'
miRNA:   3'- gCGGugCGCgCGGCCGCG--------------CGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 84550 0.66 0.455305
Target:  5'- gGCUguggaaacgaACGCGCGgCaGCGCGUgaccGCGAGGg -3'
miRNA:   3'- gCGG----------UGCGCGCgGcCGCGCG----CGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 1105 0.66 0.452708
Target:  5'- gCGCaGCGcCGcCGCCGGgagcagccgcagcaCGCGCGCGAc- -3'
miRNA:   3'- -GCGgUGC-GC-GCGGCC--------------GCGCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 75264 0.66 0.490663
Target:  5'- gCGCCACGaC-CGCaCGGCgcucuugauGCGCGCGuAGc -3'
miRNA:   3'- -GCGGUGC-GcGCG-GCCG---------CGCGCGC-UCu -5'
25897 3' -65.5 NC_005337.1 + 50180 0.66 0.455305
Target:  5'- gCGaCCGCGCccguguccGCGCucugCGGCGCGCGUcugcacacgGGGAa -3'
miRNA:   3'- -GC-GGUGCG--------CGCG----GCCGCGCGCG---------CUCU- -5'
25897 3' -65.5 NC_005337.1 + 99607 0.66 0.44668
Target:  5'- gCGCCGugaGCaacggcuaCGUCGuGCGCGUGCGGGAc -3'
miRNA:   3'- -GCGGUg--CGc-------GCGGC-CGCGCGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 49534 0.66 0.44668
Target:  5'- uCGCgCGCGCGCGggagaccagcuCCGGCGC-CGgGAa- -3'
miRNA:   3'- -GCG-GUGCGCGC-----------GGCCGCGcGCgCUcu -5'
25897 3' -65.5 NC_005337.1 + 96960 0.66 0.44668
Target:  5'- uCGCCGCGCGCGaCCagcuccucgcGGC-CGgGCGGu- -3'
miRNA:   3'- -GCGGUGCGCGC-GG----------CCGcGCgCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 128019 0.66 0.44668
Target:  5'- aCGCCgGCGCcaGCGUCaGCGacgcugacuCGCGCGGGGa -3'
miRNA:   3'- -GCGG-UGCG--CGCGGcCGC---------GCGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 29976 0.66 0.445823
Target:  5'- gCGCCGC-CGCGCCcucGCGgaccgccCGCGCGAa- -3'
miRNA:   3'- -GCGGUGcGCGCGGc--CGC-------GCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 91508 0.66 0.455305
Target:  5'- uCGUagGCG-GCGUCGaaGCGgGCGCGAGAg -3'
miRNA:   3'- -GCGg-UGCgCGCGGC--CGCgCGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 89041 0.66 0.444111
Target:  5'- gCGCaUGCGCGCGCUGcugaccaccaugacGCGgGCGCGGu- -3'
miRNA:   3'- -GCG-GUGCGCGCGGC--------------CGCgCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 3280 0.66 0.44668
Target:  5'- nGCCACGUGCagcggcgucguGUCGuaGCGCGCGu-- -3'
miRNA:   3'- gCGGUGCGCG-----------CGGCcgCGCGCGCucu -5'
25897 3' -65.5 NC_005337.1 + 90943 0.66 0.44668
Target:  5'- gGCCA-GCGCGUCGGCGaGCccCGAGc -3'
miRNA:   3'- gCGGUgCGCGCGGCCGCgCGc-GCUCu -5'
25897 3' -65.5 NC_005337.1 + 56634 0.66 0.44668
Target:  5'- uCGCgCACGgGCacGCUGGCGCGCaagGUGAu- -3'
miRNA:   3'- -GCG-GUGCgCG--CGGCCGCGCG---CGCUcu -5'
25897 3' -65.5 NC_005337.1 + 1440 0.66 0.44668
Target:  5'- gCGCgGCG-GCGCCGaG-GUGCGCGAc- -3'
miRNA:   3'- -GCGgUGCgCGCGGC-CgCGCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 75883 0.66 0.444966
Target:  5'- gGCCuccgagaACGUGCGCCcGCcgacguuGCGCGCGAa- -3'
miRNA:   3'- gCGG-------UGCGCGCGGcCG-------CGCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 60874 0.66 0.452708
Target:  5'- -uCCgACGCGCGuCCGGCGUuucgucgggcguguGUGCGGGc -3'
miRNA:   3'- gcGG-UGCGCGC-GGCCGCG--------------CGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 91197 0.66 0.445823
Target:  5'- gCGCCgcgaugcggacggGCGCGcCGCCGGUGgucaGCGCGu-- -3'
miRNA:   3'- -GCGG-------------UGCGC-GCGGCCGCg---CGCGCucu -5'
25897 3' -65.5 NC_005337.1 + 64247 0.66 0.455305
Target:  5'- uGCgGCGCuGCGgCGGCucugggacccggGCGCGCcGGAg -3'
miRNA:   3'- gCGgUGCG-CGCgGCCG------------CGCGCGcUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.