miRNA display CGI


Results 1 - 20 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25897 3' -65.5 NC_005337.1 + 87783 0.75 0.118528
Target:  5'- gCGCCGCG-GUGUCGGC-CGCGCGGGc -3'
miRNA:   3'- -GCGGUGCgCGCGGCCGcGCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 126419 0.77 0.092522
Target:  5'- cCGCCcgGCGCGCGaCGGCGCGCGUGc-- -3'
miRNA:   3'- -GCGG--UGCGCGCgGCCGCGCGCGCucu -5'
25897 3' -65.5 NC_005337.1 + 75621 0.77 0.097249
Target:  5'- aGCUugGCGCGCgugucccGCGUGCGCGAGGa -3'
miRNA:   3'- gCGGugCGCGCGgc-----CGCGCGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 64907 0.76 0.099697
Target:  5'- gGaCCugGCGCuagcgGCCGGCcCGCGCGGGAa -3'
miRNA:   3'- gC-GGugCGCG-----CGGCCGcGCGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 38473 0.76 0.102203
Target:  5'- uGCgGUGCGCGCCgGGCGCGCGCGucgccGAg -3'
miRNA:   3'- gCGgUGCGCGCGG-CCGCGCGCGCu----CU- -5'
25897 3' -65.5 NC_005337.1 + 10435 0.76 0.102203
Target:  5'- aCGCC-UGCGCGgCGGUGCGCGCGu-- -3'
miRNA:   3'- -GCGGuGCGCGCgGCCGCGCGCGCucu -5'
25897 3' -65.5 NC_005337.1 + 86404 0.76 0.107395
Target:  5'- gGCUGCGCGCGuCCGGCGCGaUGUG-GAu -3'
miRNA:   3'- gCGGUGCGCGC-GGCCGCGC-GCGCuCU- -5'
25897 3' -65.5 NC_005337.1 + 6385 0.76 0.107395
Target:  5'- cCGCaCGCGCuCGCCGGCGCcGCGCGccaccAGAc -3'
miRNA:   3'- -GCG-GUGCGcGCGGCCGCG-CGCGC-----UCU- -5'
25897 3' -65.5 NC_005337.1 + 41376 0.76 0.112833
Target:  5'- uGCCGC-CGaCGCCGGCaaccGCGCGCGGGc -3'
miRNA:   3'- gCGGUGcGC-GCGGCCG----CGCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 90309 0.77 0.092291
Target:  5'- cCGCCGgGCGCGCCGcCGUagaugguGCGCGGGAa -3'
miRNA:   3'- -GCGGUgCGCGCGGCcGCG-------CGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 49740 0.77 0.085838
Target:  5'- aCGCCggacACgGUGCGCCGGUGCGUGCG-GAa -3'
miRNA:   3'- -GCGG----UG-CGCGCGGCCGCGCGCGCuCU- -5'
25897 3' -65.5 NC_005337.1 + 98881 0.78 0.083714
Target:  5'- gCGCCGCGCGCGCgGacuGCGCGCuCGAGc -3'
miRNA:   3'- -GCGGUGCGCGCGgC---CGCGCGcGCUCu -5'
25897 3' -65.5 NC_005337.1 + 76998 0.85 0.024555
Target:  5'- aGCCGCGCGCGCCGGCccCGCGCGGc- -3'
miRNA:   3'- gCGGUGCGCGCGGCCGc-GCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 69283 0.81 0.046732
Target:  5'- cCGCCGCGCGCGaCgGGCaguuCGCGCGGGAg -3'
miRNA:   3'- -GCGGUGCGCGC-GgCCGc---GCGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 130143 0.81 0.050455
Target:  5'- gGUCGCGCGCGCUGGCGCucGCGCGcuuucGGAg -3'
miRNA:   3'- gCGGUGCGCGCGGCCGCG--CGCGC-----UCU- -5'
25897 3' -65.5 NC_005337.1 + 109166 0.8 0.051759
Target:  5'- gCGuCCGCGCGCGCCGcGC-CGCGCGGGc -3'
miRNA:   3'- -GC-GGUGCGCGCGGC-CGcGCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 110346 0.79 0.065065
Target:  5'- gCGUCGCGCGCGCCuGCcgcggGCGCGCGGGc -3'
miRNA:   3'- -GCGGUGCGCGCGGcCG-----CGCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 100674 0.79 0.066733
Target:  5'- aCGCCGCGUucGCGCC-GCGCGCGCGGc- -3'
miRNA:   3'- -GCGGUGCG--CGCGGcCGCGCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 122372 0.79 0.068442
Target:  5'- aCGCCACGCGCa-UGuGCGUGCGCGAGGu -3'
miRNA:   3'- -GCGGUGCGCGcgGC-CGCGCGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 132101 0.79 0.070194
Target:  5'- gCGCCGUGCGCGUCGGCGCcguGCGCGGc- -3'
miRNA:   3'- -GCGGUGCGCGCGGCCGCG---CGCGCUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.