miRNA display CGI


Results 1 - 20 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25897 3' -65.5 NC_005337.1 + 88330 1.08 0.000452
Target:  5'- aCGCCACGCGCGCCGGCGCGCGCGAGAa -3'
miRNA:   3'- -GCGGUGCGCGCGGCCGCGCGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 57274 0.86 0.021022
Target:  5'- gGCCGCGCgGgGCCGGCGCGCGCGGc- -3'
miRNA:   3'- gCGGUGCG-CgCGGCCGCGCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 76998 0.85 0.024555
Target:  5'- aGCCGCGCGCGCCGGCccCGCGCGGc- -3'
miRNA:   3'- gCGGUGCGCGCGGCCGc-GCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 45943 0.85 0.025199
Target:  5'- -cUCGCGCGCGCCGGCGCGCGUGGc- -3'
miRNA:   3'- gcGGUGCGCGCGGCCGCGCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 23920 0.83 0.036067
Target:  5'- gCGCC-CGCGCGCCcgcggcaGGCGCGCGCGAc- -3'
miRNA:   3'- -GCGGuGCGCGCGG-------CCGCGCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 33583 0.82 0.039057
Target:  5'- gCGCCGCGuCGCGUCGGcCGCGCGCGcGGc -3'
miRNA:   3'- -GCGGUGC-GCGCGGCC-GCGCGCGCuCU- -5'
25897 3' -65.5 NC_005337.1 + 69283 0.81 0.046732
Target:  5'- cCGCCGCGCGCGaCgGGCaguuCGCGCGGGAg -3'
miRNA:   3'- -GCGGUGCGCGC-GgCCGc---GCGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 25103 0.81 0.047943
Target:  5'- cCGCC-CGCGCgGCgCGGCGCGCGCGGa- -3'
miRNA:   3'- -GCGGuGCGCG-CG-GCCGCGCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 7850 0.81 0.050455
Target:  5'- aCGCgCACGCGCGCCGuCGCGCGCcGGGc -3'
miRNA:   3'- -GCG-GUGCGCGCGGCcGCGCGCGcUCU- -5'
25897 3' -65.5 NC_005337.1 + 130143 0.81 0.050455
Target:  5'- gGUCGCGCGCGCUGGCGCucGCGCGcuuucGGAg -3'
miRNA:   3'- gCGGUGCGCGCGGCCGCG--CGCGC-----UCU- -5'
25897 3' -65.5 NC_005337.1 + 5968 0.81 0.050455
Target:  5'- gCGCCGCGCGCgagcagacggGCCaGGCGCGCGCGuugcAGAc -3'
miRNA:   3'- -GCGGUGCGCG----------CGG-CCGCGCGCGC----UCU- -5'
25897 3' -65.5 NC_005337.1 + 109166 0.8 0.051759
Target:  5'- gCGuCCGCGCGCGCCGcGC-CGCGCGGGc -3'
miRNA:   3'- -GC-GGUGCGCGCGGC-CGcGCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 88250 0.8 0.05731
Target:  5'- aCGUCGUGCGUGCCGGCGCGCcgGCGGGc -3'
miRNA:   3'- -GCGGUGCGCGCGGCCGCGCG--CGCUCu -5'
25897 3' -65.5 NC_005337.1 + 110346 0.79 0.065065
Target:  5'- gCGUCGCGCGCGCCuGCcgcggGCGCGCGGGc -3'
miRNA:   3'- -GCGGUGCGCGCGGcCG-----CGCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 100674 0.79 0.066733
Target:  5'- aCGCCGCGUucGCGCC-GCGCGCGCGGc- -3'
miRNA:   3'- -GCGGUGCG--CGCGGcCGCGCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 122372 0.79 0.068442
Target:  5'- aCGCCACGCGCa-UGuGCGUGCGCGAGGu -3'
miRNA:   3'- -GCGGUGCGCGcgGC-CGCGCGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 132101 0.79 0.070194
Target:  5'- gCGCCGUGCGCGUCGGCGCcguGCGCGGc- -3'
miRNA:   3'- -GCGGUGCGCGCGGCCGCG---CGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 132751 0.79 0.070194
Target:  5'- cCGCaCACGaaguggcggaCGCGCUGGCGCGCGcCGAGGu -3'
miRNA:   3'- -GCG-GUGC----------GCGCGGCCGCGCGC-GCUCU- -5'
25897 3' -65.5 NC_005337.1 + 92971 0.78 0.073826
Target:  5'- aCGCCACGCuggacaacGCGCUggccgugauGGCGCuGCGCGAGAc -3'
miRNA:   3'- -GCGGUGCG--------CGCGG---------CCGCG-CGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 8143 0.78 0.073826
Target:  5'- aCGCCGggcauggcCGCGCGCaCGGCGUGCGCGuAGu -3'
miRNA:   3'- -GCGGU--------GCGCGCG-GCCGCGCGCGC-UCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.