miRNA display CGI


Results 1 - 20 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25897 3' -65.5 NC_005337.1 + 565 0.71 0.225801
Target:  5'- gGCCGCGCGUacGCCgcGGC-CGCGCG-GAa -3'
miRNA:   3'- gCGGUGCGCG--CGG--CCGcGCGCGCuCU- -5'
25897 3' -65.5 NC_005337.1 + 565 0.71 0.225801
Target:  5'- gGCCGCGCGUacGCCgcGGC-CGCGCG-GAa -3'
miRNA:   3'- gCGGUGCGCG--CGG--CCGcGCGCGCuCU- -5'
25897 3' -65.5 NC_005337.1 + 605 0.75 0.121475
Target:  5'- aCGCCACGCaggcgaacuccGCGUCGGCGUccaGCGCGGcGAc -3'
miRNA:   3'- -GCGGUGCG-----------CGCGGCCGCG---CGCGCU-CU- -5'
25897 3' -65.5 NC_005337.1 + 605 0.75 0.121475
Target:  5'- aCGCCACGCaggcgaacuccGCGUCGGCGUccaGCGCGGcGAc -3'
miRNA:   3'- -GCGGUGCG-----------CGCGGCCGCG---CGCGCU-CU- -5'
25897 3' -65.5 NC_005337.1 + 718 0.7 0.289227
Target:  5'- aCGCC-CGCGgcCGCgGGguaCGCGgGCGAGAg -3'
miRNA:   3'- -GCGGuGCGC--GCGgCC---GCGCgCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 718 0.7 0.289227
Target:  5'- aCGCC-CGCGgcCGCgGGguaCGCGgGCGAGAg -3'
miRNA:   3'- -GCGGuGCGC--GCGgCC---GCGCgCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 811 0.71 0.231043
Target:  5'- aGCUcCGCGgaGCCGuccGCGCGCGCGGGc -3'
miRNA:   3'- gCGGuGCGCg-CGGC---CGCGCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 811 0.71 0.231043
Target:  5'- aGCUcCGCGgaGCCGuccGCGCGCGCGGGc -3'
miRNA:   3'- gCGGuGCGCg-CGGC---CGCGCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 911 0.68 0.350906
Target:  5'- gCGCgACgaGCGCGgCGGCgGCG-GCGAGGc -3'
miRNA:   3'- -GCGgUG--CGCGCgGCCG-CGCgCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 911 0.68 0.350906
Target:  5'- gCGCgACgaGCGCGgCGGCgGCG-GCGAGGc -3'
miRNA:   3'- -GCGgUG--CGCGCgGCCG-CGCgCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 977 0.69 0.322389
Target:  5'- aGCgGCGgG-GCUGGCGCGgCGCGcGGAg -3'
miRNA:   3'- gCGgUGCgCgCGGCCGCGC-GCGC-UCU- -5'
25897 3' -65.5 NC_005337.1 + 977 0.69 0.322389
Target:  5'- aGCgGCGgG-GCUGGCGCGgCGCGcGGAg -3'
miRNA:   3'- gCGgUGCgCgCGGCCGCGC-GCGC-UCU- -5'
25897 3' -65.5 NC_005337.1 + 1105 0.66 0.452708
Target:  5'- gCGCaGCGcCGcCGCCGGgagcagccgcagcaCGCGCGCGAc- -3'
miRNA:   3'- -GCGgUGC-GC-GCGGCC--------------GCGCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 1105 0.66 0.452708
Target:  5'- gCGCaGCGcCGcCGCCGGgagcagccgcagcaCGCGCGCGAc- -3'
miRNA:   3'- -GCGgUGC-GC-GCGGCC--------------GCGCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 1152 0.67 0.424693
Target:  5'- cCGCgGggaGCGCGCCGGCggaGCggcccgcuaggcgguGCGCGAGc -3'
miRNA:   3'- -GCGgUg--CGCGCGGCCG---CG---------------CGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 1440 0.66 0.44668
Target:  5'- gCGCgGCG-GCGCCGaG-GUGCGCGAc- -3'
miRNA:   3'- -GCGgUGCgCGCGGC-CgCGCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 1503 0.68 0.378839
Target:  5'- cCGUCaccucgGCGCGCGCCaGCGCGUccgccacuucguguGCGGGc -3'
miRNA:   3'- -GCGG------UGCGCGCGGcCGCGCG--------------CGCUCu -5'
25897 3' -65.5 NC_005337.1 + 1555 0.67 0.438148
Target:  5'- cCGCUugaucacCGCGCGCaUGGCGCggcccagguuguGCGCGAcGAu -3'
miRNA:   3'- -GCGGu------GCGCGCG-GCCGCG------------CGCGCU-CU- -5'
25897 3' -65.5 NC_005337.1 + 1638 0.66 0.490663
Target:  5'- gGUCgauGCGCGCGCCcGCG-GCGaCGAGc -3'
miRNA:   3'- gCGG---UGCGCGCGGcCGCgCGC-GCUCu -5'
25897 3' -65.5 NC_005337.1 + 2084 0.71 0.225801
Target:  5'- gGCgCACG-GUGUCGGCGCGCgccGCGAGc -3'
miRNA:   3'- gCG-GUGCgCGCGGCCGCGCG---CGCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.