Results 21 - 40 of 346 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 29796 | 0.66 | 0.806101 |
Target: 5'- cCGCuGCGCGUgcUCCGCGuGcUCCGCGUa -3' miRNA: 3'- cGCG-UGUGCA--GGGCGU-CaAGGCGCGc -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 65990 | 0.66 | 0.77946 |
Target: 5'- gGUGCGaggccguGCGUCCCGUGGgcgaGCGCGu -3' miRNA: 3'- -CGCGUg------UGCAGGGCGUCaaggCGCGC- -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 77474 | 0.66 | 0.797361 |
Target: 5'- uGCGCggcgACGCGUCCCGgGG--CgGUGCa -3' miRNA: 3'- -CGCG----UGUGCAGGGCgUCaaGgCGCGc -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 68207 | 0.66 | 0.778551 |
Target: 5'- gGCGcCGCuGCGggCCCGCcugacggcguccgGGUUCCggaGCGCGg -3' miRNA: 3'- -CGC-GUG-UGCa-GGGCG-------------UCAAGG---CGCGC- -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 99631 | 0.66 | 0.778551 |
Target: 5'- uGCGCgugcgggACACGgacgUgCGCGGcaucgCCGCGCGg -3' miRNA: 3'- -CGCG-------UGUGCa---GgGCGUCaa---GGCGCGC- -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 47857 | 0.66 | 0.768472 |
Target: 5'- cGCGaguGCACGUCgggcgcggcggaCGCAGacUUCUGCGCGc -3' miRNA: 3'- -CGCg--UGUGCAGg-----------GCGUC--AAGGCGCGC- -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 122400 | 0.66 | 0.770316 |
Target: 5'- cGUGCuGCGCGgcggCgCGCGGcgccugUCCGCGCc -3' miRNA: 3'- -CGCG-UGUGCa---GgGCGUCa-----AGGCGCGc -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 73512 | 0.66 | 0.778551 |
Target: 5'- gGCgGUGCugGgcaCCCGCgaggcggcacucgAGUacaUCCGCGCGg -3' miRNA: 3'- -CG-CGUGugCa--GGGCG-------------UCA---AGGCGCGC- -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 117219 | 0.66 | 0.770316 |
Target: 5'- uGCGCAUccaGCGgaaCgUGCAGa-CCGCGCGg -3' miRNA: 3'- -CGCGUG---UGCa--GgGCGUCaaGGCGCGC- -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 15312 | 0.66 | 0.770316 |
Target: 5'- cGUGUcCGCGUaCCCGUGGaauaUCGCGCGa -3' miRNA: 3'- -CGCGuGUGCA-GGGCGUCaa--GGCGCGC- -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 5652 | 0.66 | 0.797361 |
Target: 5'- aCGCcCACGUUgCCGCGGUagUCgGCGUc -3' miRNA: 3'- cGCGuGUGCAG-GGCGUCA--AGgCGCGc -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 42366 | 0.66 | 0.77946 |
Target: 5'- gGCGaCGCACGUcgugaccggcgaCCCGgAGgcgCCGCgGCGc -3' miRNA: 3'- -CGC-GUGUGCA------------GGGCgUCaa-GGCG-CGC- -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 2549 | 0.66 | 0.761984 |
Target: 5'- uGCgGCACGCGgaugcugcccgcgaUCuuGCGGUUCucgauguuagccacgCGCGCGa -3' miRNA: 3'- -CG-CGUGUGC--------------AGggCGUCAAG---------------GCGCGC- -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 130148 | 0.66 | 0.806101 |
Target: 5'- cGCGCGCugGcgCUCGCgcgcuuucggAGgccgUgCGCGCGg -3' miRNA: 3'- -CGCGUGugCa-GGGCG----------UCa---AgGCGCGC- -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 5569 | 0.66 | 0.806101 |
Target: 5'- aCGCAgCGCG-CUCGCAGaucagCUGCGCu -3' miRNA: 3'- cGCGU-GUGCaGGGCGUCaa---GGCGCGc -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 25346 | 0.66 | 0.761053 |
Target: 5'- gGCGCcacgucgcgGCGCGUCUCGCuGGUgcccuugcUCaCGCGCu -3' miRNA: 3'- -CGCG---------UGUGCAGGGCG-UCA--------AG-GCGCGc -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 13822 | 0.66 | 0.761053 |
Target: 5'- cGCGCucgaGCGCGcCCCGCAGggacUCgggggGCGUGa -3' miRNA: 3'- -CGCG----UGUGCaGGGCGUCa---AGg----CGCGC- -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 95897 | 0.66 | 0.761053 |
Target: 5'- aGgGCGCuCGUgCUCGCGGcgacggcggCCGCGCGc -3' miRNA: 3'- -CgCGUGuGCA-GGGCGUCaa-------GGCGCGC- -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 128493 | 0.66 | 0.797361 |
Target: 5'- cGCGgGCguGCGUCgCGUAcGUggUCGCGCGg -3' miRNA: 3'- -CGCgUG--UGCAGgGCGU-CAa-GGCGCGC- -5' |
|||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 58644 | 0.66 | 0.806101 |
Target: 5'- cGCGCccauCACGacggCCCGCGcGUccUCgGCGCu -3' miRNA: 3'- -CGCGu---GUGCa---GGGCGU-CA--AGgCGCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home