miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25914 3' -58.9 NC_005337.1 + 99631 0.66 0.778551
Target:  5'- uGCGCgugcgggACACGgacgUgCGCGGcaucgCCGCGCGg -3'
miRNA:   3'- -CGCG-------UGUGCa---GgGCGUCaa---GGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 73512 0.66 0.778551
Target:  5'- gGCgGUGCugGgcaCCCGCgaggcggcacucgAGUacaUCCGCGCGg -3'
miRNA:   3'- -CG-CGUGugCa--GGGCG-------------UCA---AGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 25346 0.66 0.761053
Target:  5'- gGCGCcacgucgcgGCGCGUCUCGCuGGUgcccuugcUCaCGCGCu -3'
miRNA:   3'- -CGCG---------UGUGCAGGGCG-UCA--------AG-GCGCGc -5'
25914 3' -58.9 NC_005337.1 + 10448 0.66 0.761053
Target:  5'- gGUGCGCGCGUCgUGCgccAGgaccUCCGUGUc -3'
miRNA:   3'- -CGCGUGUGCAGgGCG---UCa---AGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 53663 0.66 0.770316
Target:  5'- cGCGaugcaGCGCGUCggcggCCGCaAGgaggCCGCGCu -3'
miRNA:   3'- -CGCg----UGUGCAG-----GGCG-UCaa--GGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 74243 0.66 0.770316
Target:  5'- -aGgGCGgGUCgCCGCgcgGGUcUCCGCGCGc -3'
miRNA:   3'- cgCgUGUgCAG-GGCG---UCA-AGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 42366 0.66 0.77946
Target:  5'- gGCGaCGCACGUcgugaccggcgaCCCGgAGgcgCCGCgGCGc -3'
miRNA:   3'- -CGC-GUGUGCA------------GGGCgUCaa-GGCG-CGC- -5'
25914 3' -58.9 NC_005337.1 + 122400 0.66 0.770316
Target:  5'- cGUGCuGCGCGgcggCgCGCGGcgccugUCCGCGCc -3'
miRNA:   3'- -CGCG-UGUGCa---GgGCGUCa-----AGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 13822 0.66 0.761053
Target:  5'- cGCGCucgaGCGCGcCCCGCAGggacUCgggggGCGUGa -3'
miRNA:   3'- -CGCG----UGUGCaGGGCGUCa---AGg----CGCGC- -5'
25914 3' -58.9 NC_005337.1 + 88381 0.66 0.770316
Target:  5'- -aGCGCAUGUaCCCGCA---CCGCaGCa -3'
miRNA:   3'- cgCGUGUGCA-GGGCGUcaaGGCG-CGc -5'
25914 3' -58.9 NC_005337.1 + 68207 0.66 0.778551
Target:  5'- gGCGcCGCuGCGggCCCGCcugacggcguccgGGUUCCggaGCGCGg -3'
miRNA:   3'- -CGC-GUG-UGCa-GGGCG-------------UCAAGG---CGCGC- -5'
25914 3' -58.9 NC_005337.1 + 29662 0.66 0.761053
Target:  5'- uGCGCGUGC-UCCCGCGGUggcgCCGUauGCu -3'
miRNA:   3'- -CGCGUGUGcAGGGCGUCAa---GGCG--CGc -5'
25914 3' -58.9 NC_005337.1 + 52088 0.66 0.761053
Target:  5'- cCGUGCGCGcCCgGCGG--CCGCGUGc -3'
miRNA:   3'- cGCGUGUGCaGGgCGUCaaGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 117219 0.66 0.770316
Target:  5'- uGCGCAUccaGCGgaaCgUGCAGa-CCGCGCGg -3'
miRNA:   3'- -CGCGUG---UGCa--GgGCGUCaaGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 65990 0.66 0.77946
Target:  5'- gGUGCGaggccguGCGUCCCGUGGgcgaGCGCGu -3'
miRNA:   3'- -CGCGUg------UGCAGGGCGUCaaggCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 47857 0.66 0.768472
Target:  5'- cGCGaguGCACGUCgggcgcggcggaCGCAGacUUCUGCGCGc -3'
miRNA:   3'- -CGCg--UGUGCAGg-----------GCGUC--AAGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 15312 0.66 0.770316
Target:  5'- cGUGUcCGCGUaCCCGUGGaauaUCGCGCGa -3'
miRNA:   3'- -CGCGuGUGCA-GGGCGUCaa--GGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 118571 0.66 0.806101
Target:  5'- uCGCACgACGUCCgGCAcg-UCGUGCu -3'
miRNA:   3'- cGCGUG-UGCAGGgCGUcaaGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 14643 0.66 0.761053
Target:  5'- aGCGCACcgagGCGUCCUccgGCA--UCaGCGCGg -3'
miRNA:   3'- -CGCGUG----UGCAGGG---CGUcaAGgCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 14315 0.66 0.770316
Target:  5'- -aGCGCGCG-CUCGaGGUUCCGCuCGu -3'
miRNA:   3'- cgCGUGUGCaGGGCgUCAAGGCGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.