miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25914 3' -58.9 NC_005337.1 + 98400 1.1 0.001302
Target:  5'- cGCGCACACGUCCCGCAGUUCCGCGCGu -3'
miRNA:   3'- -CGCGUGUGCAGGGCGUCAAGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 58869 0.82 0.104669
Target:  5'- cGCGCGC-CGUCCgCGCA--UCCGCGCGg -3'
miRNA:   3'- -CGCGUGuGCAGG-GCGUcaAGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 711 0.8 0.1386
Target:  5'- cGCGCGCACG-CCCGCGG--CCGCGgGg -3'
miRNA:   3'- -CGCGUGUGCaGGGCGUCaaGGCGCgC- -5'
25914 3' -58.9 NC_005337.1 + 711 0.8 0.1386
Target:  5'- cGCGCGCACG-CCCGCGG--CCGCGgGg -3'
miRNA:   3'- -CGCGUGUGCaGGGCGUCaaGGCGCgC- -5'
25914 3' -58.9 NC_005337.1 + 7916 0.8 0.15327
Target:  5'- gGCGUACAUGUCCUGCAGgUCCuucuccauGCGCGc -3'
miRNA:   3'- -CGCGUGUGCAGGGCGUCaAGG--------CGCGC- -5'
25914 3' -58.9 NC_005337.1 + 95161 0.78 0.196257
Target:  5'- aGCGCACGCuG-CCCGCgAGcUUCCGCGCc -3'
miRNA:   3'- -CGCGUGUG-CaGGGCG-UC-AAGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 112381 0.78 0.211073
Target:  5'- -aGCGCGCGUCCUGgAGgagcgCCGCGCa -3'
miRNA:   3'- cgCGUGUGCAGGGCgUCaa---GGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 65056 0.77 0.221478
Target:  5'- cGCGCGCACGUUCUGgAagUCCGUGCGc -3'
miRNA:   3'- -CGCGUGUGCAGGGCgUcaAGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 7324 0.77 0.232316
Target:  5'- cCGCACACGUCgCGCGcGUucacgUCCGCGCc -3'
miRNA:   3'- cGCGUGUGCAGgGCGU-CA-----AGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 98849 0.76 0.267525
Target:  5'- cGCGCcguGCGCGUCCaucgaGCAGUacuaccgcgCCGCGCGc -3'
miRNA:   3'- -CGCG---UGUGCAGGg----CGUCAa--------GGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 17030 0.76 0.267525
Target:  5'- cGCGCACuGCGUCgCGU---UCCGCGCGg -3'
miRNA:   3'- -CGCGUG-UGCAGgGCGucaAGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 91748 0.76 0.271902
Target:  5'- aGCGCGuccggcgggaacacCAUGUCCgucuccgggaGCAGUUCCGCGCGc -3'
miRNA:   3'- -CGCGU--------------GUGCAGGg---------CGUCAAGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 16549 0.76 0.273796
Target:  5'- aUGCACGCGUCCCGCAGcaCCGUc-- -3'
miRNA:   3'- cGCGUGUGCAGGGCGUCaaGGCGcgc -5'
25914 3' -58.9 NC_005337.1 + 78069 0.76 0.273796
Target:  5'- cCGC-CACGUCCUGCAGguagCGCGCGu -3'
miRNA:   3'- cGCGuGUGCAGGGCGUCaag-GCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 39426 0.75 0.28669
Target:  5'- cGCGCGgGCG-CCCGCucGggCCGCGCu -3'
miRNA:   3'- -CGCGUgUGCaGGGCGu-CaaGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 100689 0.75 0.306229
Target:  5'- cGCGCGCGCGgCCgacgcgaCGCGGcgCCGCGCu -3'
miRNA:   3'- -CGCGUGUGCaGG-------GCGUCaaGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 6385 0.75 0.321005
Target:  5'- cCGCACGCG-CUCGcCGGcgCCGCGCGc -3'
miRNA:   3'- cGCGUGUGCaGGGC-GUCaaGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 23919 0.74 0.328226
Target:  5'- cGCGCccGCGCG-CCCGCGGcaggCgCGCGCGa -3'
miRNA:   3'- -CGCG--UGUGCaGGGCGUCaa--G-GCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 11845 0.74 0.335567
Target:  5'- gGCGUGCAUGUgCCGCA--UCgGCGCGg -3'
miRNA:   3'- -CGCGUGUGCAgGGCGUcaAGgCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 110350 0.74 0.343027
Target:  5'- cGCGCGCGCcUgCCGCGGg--CGCGCGg -3'
miRNA:   3'- -CGCGUGUGcAgGGCGUCaagGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.