miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25914 3' -58.9 NC_005337.1 + 87826 0.73 0.412852
Target:  5'- uCGCACGCGUCCgCGUAcgcGUuguacaggaucccgUCCGUGCGg -3'
miRNA:   3'- cGCGUGUGCAGG-GCGU---CA--------------AGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 95395 0.74 0.366117
Target:  5'- aCGCGCGCGaacUCCgaGCAGaaCCGCGCGu -3'
miRNA:   3'- cGCGUGUGC---AGGg-CGUCaaGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 50766 0.73 0.374048
Target:  5'- gGCGCACGCGU---GCGGUUCC-CGCGg -3'
miRNA:   3'- -CGCGUGUGCAgggCGUCAAGGcGCGC- -5'
25914 3' -58.9 NC_005337.1 + 75626 0.73 0.374048
Target:  5'- gGCGCGCGUGUCCCGCG----UGCGCGa -3'
miRNA:   3'- -CGCGUGUGCAGGGCGUcaagGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 95448 0.73 0.390256
Target:  5'- gGCGUACGCGUCCagCGCGGcguagcgccCCGUGCGc -3'
miRNA:   3'- -CGCGUGUGCAGG--GCGUCaa-------GGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 109261 0.73 0.390256
Target:  5'- cGCGCGCACGUCgaaGCGGUggaagcuguccaUgCGCGCGu -3'
miRNA:   3'- -CGCGUGUGCAGgg-CGUCA------------AgGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 108822 0.73 0.39853
Target:  5'- aCGCACGCGUCCaCGguGccgaagCGCGCGg -3'
miRNA:   3'- cGCGUGUGCAGG-GCguCaag---GCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 7099 0.73 0.39853
Target:  5'- uCGUACGCGUCagacuCGCGGacgUCCGCGCc -3'
miRNA:   3'- cGCGUGUGCAGg----GCGUCa--AGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 41745 0.73 0.406916
Target:  5'- cGCGCAcCGCGUCCaugggGCGG--CCGCGCa -3'
miRNA:   3'- -CGCGU-GUGCAGGg----CGUCaaGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 61406 0.74 0.358302
Target:  5'- gGCGUGCACGUCCaGCAGgUUCGCGg- -3'
miRNA:   3'- -CGCGUGUGCAGGgCGUCaAGGCGCgc -5'
25914 3' -58.9 NC_005337.1 + 109538 0.74 0.355981
Target:  5'- gGCGCgauggcgguguaggGCGCGUaCCCGCGGaacUCCGCGgGg -3'
miRNA:   3'- -CGCG--------------UGUGCA-GGGCGUCa--AGGCGCgC- -5'
25914 3' -58.9 NC_005337.1 + 131421 0.74 0.349842
Target:  5'- gGCGCGCGgcuccgcggacucCGUCuCCGCGGaggCCGCGCu -3'
miRNA:   3'- -CGCGUGU-------------GCAG-GGCGUCaa-GGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 58869 0.82 0.104669
Target:  5'- cGCGCGC-CGUCCgCGCA--UCCGCGCGg -3'
miRNA:   3'- -CGCGUGuGCAGG-GCGUcaAGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 711 0.8 0.1386
Target:  5'- cGCGCGCACG-CCCGCGG--CCGCGgGg -3'
miRNA:   3'- -CGCGUGUGCaGGGCGUCaaGGCGCgC- -5'
25914 3' -58.9 NC_005337.1 + 7916 0.8 0.15327
Target:  5'- gGCGUACAUGUCCUGCAGgUCCuucuccauGCGCGc -3'
miRNA:   3'- -CGCGUGUGCAGGGCGUCaAGG--------CGCGC- -5'
25914 3' -58.9 NC_005337.1 + 7324 0.77 0.232316
Target:  5'- cCGCACACGUCgCGCGcGUucacgUCCGCGCc -3'
miRNA:   3'- cGCGUGUGCAGgGCGU-CA-----AGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 98849 0.76 0.267525
Target:  5'- cGCGCcguGCGCGUCCaucgaGCAGUacuaccgcgCCGCGCGc -3'
miRNA:   3'- -CGCG---UGUGCAGGg----CGUCAa--------GGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 100689 0.75 0.306229
Target:  5'- cGCGCGCGCGgCCgacgcgaCGCGGcgCCGCGCu -3'
miRNA:   3'- -CGCGUGUGCaGG-------GCGUCaaGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 6385 0.75 0.321005
Target:  5'- cCGCACGCG-CUCGcCGGcgCCGCGCGc -3'
miRNA:   3'- cGCGUGUGCaGGGC-GUCaaGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 110350 0.74 0.343027
Target:  5'- cGCGCGCGCcUgCCGCGGg--CGCGCGg -3'
miRNA:   3'- -CGCGUGUGcAgGGCGUCaagGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.