miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25914 3' -58.9 NC_005337.1 + 565 0.7 0.525002
Target:  5'- gGC-CGCGCGUacgCCGCGG--CCGCGCGg -3'
miRNA:   3'- -CGcGUGUGCAg--GGCGUCaaGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 565 0.7 0.525002
Target:  5'- gGC-CGCGCGUacgCCGCGG--CCGCGCGg -3'
miRNA:   3'- -CGcGUGUGCAg--GGCGUCaaGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 711 0.8 0.1386
Target:  5'- cGCGCGCACG-CCCGCGG--CCGCGgGg -3'
miRNA:   3'- -CGCGUGUGCaGGGCGUCaaGGCGCgC- -5'
25914 3' -58.9 NC_005337.1 + 711 0.8 0.1386
Target:  5'- cGCGCGCACG-CCCGCGG--CCGCGgGg -3'
miRNA:   3'- -CGCGUGUGCaGGGCGUCaaGGCGCgC- -5'
25914 3' -58.9 NC_005337.1 + 742 0.66 0.800875
Target:  5'- gGCGagaGCGCGgcgCCCGCGGccucgacggcggccaUgugCUGCGCGc -3'
miRNA:   3'- -CGCg--UGUGCa--GGGCGUC---------------Aa--GGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 742 0.66 0.800875
Target:  5'- gGCGagaGCGCGgcgCCCGCGGccucgacggcggccaUgugCUGCGCGc -3'
miRNA:   3'- -CGCg--UGUGCa--GGGCGUC---------------Aa--GGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 1452 0.67 0.751681
Target:  5'- cGUGCACgugaACGUCgcggauCCGUuGgcgUCCGCGCGc -3'
miRNA:   3'- -CGCGUG----UGCAG------GGCGuCa--AGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 1567 0.69 0.6338
Target:  5'- cGCGCGCAUGgcgcggCCCa-GGUUgUGCGCGa -3'
miRNA:   3'- -CGCGUGUGCa-----GGGcgUCAAgGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 1643 0.68 0.66083
Target:  5'- aUGCGCGCG-CCCGCGGcgacgagcuuggccgCCGcCGCGu -3'
miRNA:   3'- cGCGUGUGCaGGGCGUCaa-------------GGC-GCGC- -5'
25914 3' -58.9 NC_005337.1 + 1850 0.67 0.751681
Target:  5'- aGCGCGCaguugguggccGCGUgUCCGCuGUUCaccaGCGCu -3'
miRNA:   3'- -CGCGUG-----------UGCA-GGGCGuCAAGg---CGCGc -5'
25914 3' -58.9 NC_005337.1 + 2208 0.7 0.528861
Target:  5'- cGCGgGCGCGgCCCgggccgcgagcgcgcGCAGgaaCCGCGCGa -3'
miRNA:   3'- -CGCgUGUGCaGGG---------------CGUCaa-GGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 2549 0.66 0.761984
Target:  5'- uGCgGCACGCGgaugcugcccgcgaUCuuGCGGUUCucgauguuagccacgCGCGCGa -3'
miRNA:   3'- -CG-CGUGUGC--------------AGggCGUCAAG---------------GCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 2848 0.73 0.406916
Target:  5'- cGCGgAgACGgagUCCGCGGagCCGCGCGc -3'
miRNA:   3'- -CGCgUgUGCa--GGGCGUCaaGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 3248 0.67 0.722994
Target:  5'- cGCGCGCACGcCuuGUcGUUgCgguGCGCGg -3'
miRNA:   3'- -CGCGUGUGCaGggCGuCAAgG---CGCGC- -5'
25914 3' -58.9 NC_005337.1 + 3620 0.68 0.673797
Target:  5'- cCGUAgACGUCCCucgcgcGCAcgUCCGCGCc -3'
miRNA:   3'- cGCGUgUGCAGGG------CGUcaAGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 3629 0.67 0.732642
Target:  5'- aGgGCACcuguGCGUCcagcgCCGCGGccucgucgUCCGCGCa -3'
miRNA:   3'- -CgCGUG----UGCAG-----GGCGUCa-------AGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 4005 0.67 0.722994
Target:  5'- cGCGCugACGaggacgUCCCGCAGgcUCaugGCGgGg -3'
miRNA:   3'- -CGCGugUGC------AGGGCGUCa-AGg--CGCgC- -5'
25914 3' -58.9 NC_005337.1 + 4006 0.69 0.587801
Target:  5'- aUGCGCACGUCCUuggggccaccgguguGCAGguaCGCGUGc -3'
miRNA:   3'- cGCGUGUGCAGGG---------------CGUCaagGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 4110 0.66 0.806101
Target:  5'- cGCGCGCACGgCCuccgaaagcgCGCgAGcgCCaGCGCGc -3'
miRNA:   3'- -CGCGUGUGCaGG----------GCG-UCaaGG-CGCGC- -5'
25914 3' -58.9 NC_005337.1 + 4762 0.68 0.663827
Target:  5'- cGCGCgagcaGCGCGUCgaugacgCGCGGgUCCGUGCa -3'
miRNA:   3'- -CGCG-----UGUGCAGg------GCGUCaAGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.