Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25924 | 3' | -56 | NC_005337.1 | + | 35363 | 0.7 | 0.629177 |
Target: 5'- gGACGGCugGCggGCGgacggugacuugGUGguUCCGGUGc -3' miRNA: 3'- -UUGCCGugUG--UGCa-----------CACguAGGCCAC- -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 42130 | 0.7 | 0.652085 |
Target: 5'- gGACGGCGCugGCccgcgGcGCGUCCGGg- -3' miRNA: 3'- -UUGCCGUGugUGca---CaCGUAGGCCac -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 82148 | 0.69 | 0.703698 |
Target: 5'- uGGCGGCGCACACG-GUGgcggccacgucCGUcCCGGUc -3' miRNA: 3'- -UUGCCGUGUGUGCaCAC-----------GUA-GGCCAc -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 49733 | 0.68 | 0.773052 |
Target: 5'- gAGCGGgACgccggACACG-GUGCG-CCGGUGc -3' miRNA: 3'- -UUGCCgUG-----UGUGCaCACGUaGGCCAC- -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 9018 | 0.68 | 0.782516 |
Target: 5'- --gGGCACGCACGaUGaGCGUCCGu-- -3' miRNA: 3'- uugCCGUGUGUGC-ACaCGUAGGCcac -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 127779 | 0.68 | 0.782516 |
Target: 5'- uGACGGa--GCGCGUgGUGCGggugCUGGUGg -3' miRNA: 3'- -UUGCCgugUGUGCA-CACGUa---GGCCAC- -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 42401 | 0.68 | 0.782516 |
Target: 5'- cGCGGCGCGCGgccuCGcUGUGCG-CCGGc- -3' miRNA: 3'- uUGCCGUGUGU----GC-ACACGUaGGCCac -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 3384 | 0.68 | 0.773052 |
Target: 5'- cGugGGCgagaaGCGCGCGUGcGCcAUCUGGUa -3' miRNA: 3'- -UugCCG-----UGUGUGCACaCG-UAGGCCAc -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 43073 | 0.68 | 0.79184 |
Target: 5'- cGGCGGCGCGCcCGUccGCAUCgCGGc- -3' miRNA: 3'- -UUGCCGUGUGuGCAcaCGUAG-GCCac -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 73441 | 0.67 | 0.810031 |
Target: 5'- gAGCGaCACGCGCGUGcuCAUCCGcGUGc -3' miRNA: 3'- -UUGCcGUGUGUGCACacGUAGGC-CAC- -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 83419 | 0.67 | 0.810031 |
Target: 5'- aGAUGGCGCcCACGa--GCAUCuCGGUGc -3' miRNA: 3'- -UUGCCGUGuGUGCacaCGUAG-GCCAC- -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 56889 | 0.67 | 0.818881 |
Target: 5'- cGCGGCGCcgGCugGUGuUGCGgcaccgcgggaUCCGGg- -3' miRNA: 3'- uUGCCGUG--UGugCAC-ACGU-----------AGGCCac -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 122806 | 0.68 | 0.773052 |
Target: 5'- cGCGGC-CAUcgaccgcaGCGUGcGCGUCCGcGUGa -3' miRNA: 3'- uUGCCGuGUG--------UGCACaCGUAGGC-CAC- -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 57956 | 0.69 | 0.723972 |
Target: 5'- cACGGcCACGCcCGUGgucaacaGCGUCCGGg- -3' miRNA: 3'- uUGCC-GUGUGuGCACa------CGUAGGCCac -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 127890 | 0.69 | 0.703698 |
Target: 5'- cGCGGCGCcggcgaGCGCGUGcggGCcgagCCGGUGc -3' miRNA: 3'- uUGCCGUG------UGUGCACa--CGua--GGCCAC- -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 100097 | 0.69 | 0.703698 |
Target: 5'- cGCGGCGCGcCGCGUGgagcugcGCAUCCccGUGg -3' miRNA: 3'- uUGCCGUGU-GUGCACa------CGUAGGc-CAC- -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 10882 | 0.69 | 0.703698 |
Target: 5'- gGGCGaGCAC-CACGUGUGCGgggaCGGg- -3' miRNA: 3'- -UUGC-CGUGuGUGCACACGUag--GCCac -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 29395 | 0.7 | 0.671808 |
Target: 5'- -cCGGaUGCACACGUGUGUgccguuuAUCCGGg- -3' miRNA: 3'- uuGCC-GUGUGUGCACACG-------UAGGCCac -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 67516 | 0.71 | 0.60005 |
Target: 5'- cAGCGGCcCGCGCGUGcgGCggUUGGUGa -3' miRNA: 3'- -UUGCCGuGUGUGCACa-CGuaGGCCAC- -5' |
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25924 | 3' | -56 | NC_005337.1 | + | 25115 | 0.66 | 0.882697 |
Target: 5'- cGCGGCGCGCGCGgacgcGUGaaUAUUCGGc- -3' miRNA: 3'- uUGCCGUGUGUGCa----CAC--GUAGGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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