miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25924 3' -56 NC_005337.1 + 39650 0.66 0.852438
Target:  5'- cAGCGGCGCGgcCGCGUGgggcGCGUggccCCGGg- -3'
miRNA:   3'- -UUGCCGUGU--GUGCACa---CGUA----GGCCac -5'
25924 3' -56 NC_005337.1 + 58728 0.68 0.79184
Target:  5'- gAugGGCGCgccgGCGCGgGUGCA-CCGGa- -3'
miRNA:   3'- -UugCCGUG----UGUGCaCACGUaGGCCac -5'
25924 3' -56 NC_005337.1 + 9308 0.67 0.801924
Target:  5'- uGGCGGCgaACGCACGgacgacagccgagcUGCGUCCGGa- -3'
miRNA:   3'- -UUGCCG--UGUGUGCac------------ACGUAGGCCac -5'
25924 3' -56 NC_005337.1 + 123117 0.67 0.809137
Target:  5'- cACGGCGaGCACGUcGUGCggcgcccGUCgCGGUGc -3'
miRNA:   3'- uUGCCGUgUGUGCA-CACG-------UAG-GCCAC- -5'
25924 3' -56 NC_005337.1 + 89294 0.67 0.810031
Target:  5'- gGACGGCgGCGaGCGUGUuggagcGCAgCCGGUGc -3'
miRNA:   3'- -UUGCCG-UGUgUGCACA------CGUaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 13271 0.67 0.818003
Target:  5'- -uCGGCACACGaagcagacgucCGUGUucgccggacccaaGCAgugCCGGUGg -3'
miRNA:   3'- uuGCCGUGUGU-----------GCACA-------------CGUa--GGCCAC- -5'
25924 3' -56 NC_005337.1 + 47672 0.67 0.818881
Target:  5'- -cCGGCAUGCugGcGgGCGUCCGcGUGc -3'
miRNA:   3'- uuGCCGUGUGugCaCaCGUAGGC-CAC- -5'
25924 3' -56 NC_005337.1 + 28254 0.66 0.844341
Target:  5'- cGCGGCACcacgcGCACGUGcgugGUGUCC-GUGa -3'
miRNA:   3'- uUGCCGUG-----UGUGCACa---CGUAGGcCAC- -5'
25924 3' -56 NC_005337.1 + 50765 0.66 0.852438
Target:  5'- --gGGCGCACGCGUGcGguUCCcgcGGUc -3'
miRNA:   3'- uugCCGUGUGUGCACaCguAGG---CCAc -5'
25924 3' -56 NC_005337.1 + 42401 0.68 0.782516
Target:  5'- cGCGGCGCGCGgccuCGcUGUGCG-CCGGc- -3'
miRNA:   3'- uUGCCGUGUGU----GC-ACACGUaGGCCac -5'
25924 3' -56 NC_005337.1 + 127779 0.68 0.782516
Target:  5'- uGACGGa--GCGCGUgGUGCGggugCUGGUGg -3'
miRNA:   3'- -UUGCCgugUGUGCA-CACGUa---GGCCAC- -5'
25924 3' -56 NC_005337.1 + 9018 0.68 0.782516
Target:  5'- --gGGCACGCACGaUGaGCGUCCGu-- -3'
miRNA:   3'- uugCCGUGUGUGC-ACaCGUAGGCcac -5'
25924 3' -56 NC_005337.1 + 68327 0.74 0.423322
Target:  5'- gGGCGGCACGCGCGUGccCGUgCCGGa- -3'
miRNA:   3'- -UUGCCGUGUGUGCACacGUA-GGCCac -5'
25924 3' -56 NC_005337.1 + 10444 0.73 0.476329
Target:  5'- cGGCGGUGCGCGCGUcGUGCgccaggaccuccguGUCCGGa- -3'
miRNA:   3'- -UUGCCGUGUGUGCA-CACG--------------UAGGCCac -5'
25924 3' -56 NC_005337.1 + 40850 0.73 0.508481
Target:  5'- cACGGgACACGCGUcgccGUGCccCCGGUGc -3'
miRNA:   3'- uUGCCgUGUGUGCA----CACGuaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 122540 0.71 0.610439
Target:  5'- cGCGGCgACGCGCGc-UGCAgCCGGUGc -3'
miRNA:   3'- uUGCCG-UGUGUGCacACGUaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 35363 0.7 0.629177
Target:  5'- gGACGGCugGCggGCGgacggugacuugGUGguUCCGGUGc -3'
miRNA:   3'- -UUGCCGugUG--UGCa-----------CACguAGGCCAC- -5'
25924 3' -56 NC_005337.1 + 42130 0.7 0.652085
Target:  5'- gGACGGCGCugGCccgcgGcGCGUCCGGg- -3'
miRNA:   3'- -UUGCCGUGugUGca---CaCGUAGGCCac -5'
25924 3' -56 NC_005337.1 + 82148 0.69 0.703698
Target:  5'- uGGCGGCGCACACG-GUGgcggccacgucCGUcCCGGUc -3'
miRNA:   3'- -UUGCCGUGUGUGCaCAC-----------GUA-GGCCAc -5'
25924 3' -56 NC_005337.1 + 49733 0.68 0.773052
Target:  5'- gAGCGGgACgccggACACG-GUGCG-CCGGUGc -3'
miRNA:   3'- -UUGCCgUG-----UGUGCaCACGUaGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.