miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25924 3' -56 NC_005337.1 + 2352 0.66 0.868007
Target:  5'- cGCGGCGCACgauccGCGccagGUGCucuAUCgGGUGc -3'
miRNA:   3'- uUGCCGUGUG-----UGCa---CACG---UAGgCCAC- -5'
25924 3' -56 NC_005337.1 + 2623 0.67 0.827554
Target:  5'- cGCGGCGCGCACGg--GC-UCCucgaagcggaaGGUGg -3'
miRNA:   3'- uUGCCGUGUGUGCacaCGuAGG-----------CCAC- -5'
25924 3' -56 NC_005337.1 + 3107 0.66 0.868007
Target:  5'- -cCGcGCGCAUcagcagcagcaGCGUGUGCAgcacgcgCCGGUa -3'
miRNA:   3'- uuGC-CGUGUG-----------UGCACACGUa------GGCCAc -5'
25924 3' -56 NC_005337.1 + 3384 0.68 0.773052
Target:  5'- cGugGGCgagaaGCGCGCGUGcGCcAUCUGGUa -3'
miRNA:   3'- -UugCCG-----UGUGUGCACaCG-UAGGCCAc -5'
25924 3' -56 NC_005337.1 + 5992 0.67 0.818881
Target:  5'- --aGGCGCGCGCGU-UGCAgaccgCCGcGUGc -3'
miRNA:   3'- uugCCGUGUGUGCAcACGUa----GGC-CAC- -5'
25924 3' -56 NC_005337.1 + 8879 0.66 0.868007
Target:  5'- uGACGGCACGCAgCGUGUcggGCGUuaCCGu-- -3'
miRNA:   3'- -UUGCCGUGUGU-GCACA---CGUA--GGCcac -5'
25924 3' -56 NC_005337.1 + 9018 0.68 0.782516
Target:  5'- --gGGCACGCACGaUGaGCGUCCGu-- -3'
miRNA:   3'- uugCCGUGUGUGC-ACaCGUAGGCcac -5'
25924 3' -56 NC_005337.1 + 9308 0.67 0.801924
Target:  5'- uGGCGGCgaACGCACGgacgacagccgagcUGCGUCCGGa- -3'
miRNA:   3'- -UUGCCG--UGUGUGCac------------ACGUAGGCCac -5'
25924 3' -56 NC_005337.1 + 10444 0.73 0.476329
Target:  5'- cGGCGGUGCGCGCGUcGUGCgccaggaccuccguGUCCGGa- -3'
miRNA:   3'- -UUGCCGUGUGUGCA-CACG--------------UAGGCCac -5'
25924 3' -56 NC_005337.1 + 10882 0.69 0.703698
Target:  5'- gGGCGaGCAC-CACGUGUGCGgggaCGGg- -3'
miRNA:   3'- -UUGC-CGUGuGUGCACACGUag--GCCac -5'
25924 3' -56 NC_005337.1 + 13271 0.67 0.818003
Target:  5'- -uCGGCACACGaagcagacgucCGUGUucgccggacccaaGCAgugCCGGUGg -3'
miRNA:   3'- uuGCCGUGUGU-----------GCACA-------------CGUa--GGCCAC- -5'
25924 3' -56 NC_005337.1 + 17347 0.66 0.868007
Target:  5'- uACGGCACGCGCagcagcaccGUcUGCcgcCCGGUGa -3'
miRNA:   3'- uUGCCGUGUGUG---------CAcACGua-GGCCAC- -5'
25924 3' -56 NC_005337.1 + 18775 0.67 0.824971
Target:  5'- cGAgGGCGCACcugACGUccacggccccgugcGUGCA-CCGGUGc -3'
miRNA:   3'- -UUgCCGUGUG---UGCA--------------CACGUaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 25115 0.66 0.882697
Target:  5'- cGCGGCGCGCGCGgacgcGUGaaUAUUCGGc- -3'
miRNA:   3'- uUGCCGUGUGUGCa----CAC--GUAGGCCac -5'
25924 3' -56 NC_005337.1 + 28254 0.66 0.844341
Target:  5'- cGCGGCACcacgcGCACGUGcgugGUGUCC-GUGa -3'
miRNA:   3'- uUGCCGUG-----UGUGCACa---CGUAGGcCAC- -5'
25924 3' -56 NC_005337.1 + 29395 0.7 0.671808
Target:  5'- -cCGGaUGCACACGUGUGUgccguuuAUCCGGg- -3'
miRNA:   3'- uuGCC-GUGUGUGCACACG-------UAGGCCac -5'
25924 3' -56 NC_005337.1 + 35363 0.7 0.629177
Target:  5'- gGACGGCugGCggGCGgacggugacuugGUGguUCCGGUGc -3'
miRNA:   3'- -UUGCCGugUG--UGCa-----------CACguAGGCCAC- -5'
25924 3' -56 NC_005337.1 + 39650 0.66 0.852438
Target:  5'- cAGCGGCGCGgcCGCGUGgggcGCGUggccCCGGg- -3'
miRNA:   3'- -UUGCCGUGU--GUGCACa---CGUA----GGCCac -5'
25924 3' -56 NC_005337.1 + 40850 0.73 0.508481
Target:  5'- cACGGgACACGCGUcgccGUGCccCCGGUGc -3'
miRNA:   3'- uUGCCgUGUGUGCA----CACGuaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 42130 0.7 0.652085
Target:  5'- gGACGGCGCugGCccgcgGcGCGUCCGGg- -3'
miRNA:   3'- -UUGCCGUGugUGca---CaCGUAGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.