miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25924 3' -56 NC_005337.1 + 104879 1.05 0.004096
Target:  5'- aAACGGCACACACGUGUGCAUCCGGUGc -3'
miRNA:   3'- -UUGCCGUGUGUGCACACGUAGGCCAC- -5'
25924 3' -56 NC_005337.1 + 131894 0.74 0.414391
Target:  5'- aGGCgGGCGCGCACGUGgacGCGgucgaCCGGUGc -3'
miRNA:   3'- -UUG-CCGUGUGUGCACa--CGUa----GGCCAC- -5'
25924 3' -56 NC_005337.1 + 68327 0.74 0.423322
Target:  5'- gGGCGGCACGCGCGUGccCGUgCCGGa- -3'
miRNA:   3'- -UUGCCGUGUGUGCACacGUA-GGCCac -5'
25924 3' -56 NC_005337.1 + 10444 0.73 0.476329
Target:  5'- cGGCGGUGCGCGCGUcGUGCgccaggaccuccguGUCCGGa- -3'
miRNA:   3'- -UUGCCGUGUGUGCA-CACG--------------UAGGCCac -5'
25924 3' -56 NC_005337.1 + 40850 0.73 0.508481
Target:  5'- cACGGgACACGCGUcgccGUGCccCCGGUGc -3'
miRNA:   3'- uUGCCgUGUGUGCA----CACGuaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 67516 0.71 0.60005
Target:  5'- cAGCGGCcCGCGCGUGcgGCggUUGGUGa -3'
miRNA:   3'- -UUGCCGuGUGUGCACa-CGuaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 122540 0.71 0.610439
Target:  5'- cGCGGCgACGCGCGc-UGCAgCCGGUGc -3'
miRNA:   3'- uUGCCG-UGUGUGCacACGUaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 35363 0.7 0.629177
Target:  5'- gGACGGCugGCggGCGgacggugacuugGUGguUCCGGUGc -3'
miRNA:   3'- -UUGCCGugUG--UGCa-----------CACguAGGCCAC- -5'
25924 3' -56 NC_005337.1 + 42130 0.7 0.652085
Target:  5'- gGACGGCGCugGCccgcgGcGCGUCCGGg- -3'
miRNA:   3'- -UUGCCGUGugUGca---CaCGUAGGCCac -5'
25924 3' -56 NC_005337.1 + 29395 0.7 0.671808
Target:  5'- -cCGGaUGCACACGUGUGUgccguuuAUCCGGg- -3'
miRNA:   3'- uuGCC-GUGUGUGCACACG-------UAGGCCac -5'
25924 3' -56 NC_005337.1 + 82148 0.69 0.703698
Target:  5'- uGGCGGCGCACACG-GUGgcggccacgucCGUcCCGGUc -3'
miRNA:   3'- -UUGCCGUGUGUGCaCAC-----------GUA-GGCCAc -5'
25924 3' -56 NC_005337.1 + 10882 0.69 0.703698
Target:  5'- gGGCGaGCAC-CACGUGUGCGgggaCGGg- -3'
miRNA:   3'- -UUGC-CGUGuGUGCACACGUag--GCCac -5'
25924 3' -56 NC_005337.1 + 100097 0.69 0.703698
Target:  5'- cGCGGCGCGcCGCGUGgagcugcGCAUCCccGUGg -3'
miRNA:   3'- uUGCCGUGU-GUGCACa------CGUAGGc-CAC- -5'
25924 3' -56 NC_005337.1 + 127890 0.69 0.703698
Target:  5'- cGCGGCGCcggcgaGCGCGUGcggGCcgagCCGGUGc -3'
miRNA:   3'- uUGCCGUG------UGUGCACa--CGua--GGCCAC- -5'
25924 3' -56 NC_005337.1 + 57956 0.69 0.723972
Target:  5'- cACGGcCACGCcCGUGgucaacaGCGUCCGGg- -3'
miRNA:   3'- uUGCC-GUGUGuGCACa------CGUAGGCCac -5'
25924 3' -56 NC_005337.1 + 122806 0.68 0.773052
Target:  5'- cGCGGC-CAUcgaccgcaGCGUGcGCGUCCGcGUGa -3'
miRNA:   3'- uUGCCGuGUG--------UGCACaCGUAGGC-CAC- -5'
25924 3' -56 NC_005337.1 + 3384 0.68 0.773052
Target:  5'- cGugGGCgagaaGCGCGCGUGcGCcAUCUGGUa -3'
miRNA:   3'- -UugCCG-----UGUGUGCACaCG-UAGGCCAc -5'
25924 3' -56 NC_005337.1 + 49733 0.68 0.773052
Target:  5'- gAGCGGgACgccggACACG-GUGCG-CCGGUGc -3'
miRNA:   3'- -UUGCCgUG-----UGUGCaCACGUaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 42401 0.68 0.782516
Target:  5'- cGCGGCGCGCGgccuCGcUGUGCG-CCGGc- -3'
miRNA:   3'- uUGCCGUGUGU----GC-ACACGUaGGCCac -5'
25924 3' -56 NC_005337.1 + 9018 0.68 0.782516
Target:  5'- --gGGCACGCACGaUGaGCGUCCGu-- -3'
miRNA:   3'- uugCCGUGUGUGC-ACaCGUAGGCcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.