miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25988 5' -52.9 NC_005340.1 + 11096 0.65 0.671974
Target:  5'- aCAGCAggcuuuugaggggcuGAGCGUGGCGGgGucugucgggucguacCAGUAUCa -3'
miRNA:   3'- gGUCGU---------------UUUGCGUCGCCgU---------------GUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 6460 0.66 0.650768
Target:  5'- aCCGGCAucACGCAG-GGUcaGGCcgGUCa -3'
miRNA:   3'- -GGUCGUuuUGCGUCgCCGugUCG--UAG- -5'
25988 5' -52.9 NC_005340.1 + 12254 0.66 0.650768
Target:  5'- cCCGGCAuGGugGCcgcagcaagcuuAGCGGCucCGGCAg- -3'
miRNA:   3'- -GGUCGU-UUugCG------------UCGCCGu-GUCGUag -5'
25988 5' -52.9 NC_005340.1 + 6635 0.66 0.650768
Target:  5'- gCCGGUuaacuGAACGCuccccgagccgGGCGGCAC-GCcgGUCa -3'
miRNA:   3'- -GGUCGu----UUUGCG-----------UCGCCGUGuCG--UAG- -5'
25988 5' -52.9 NC_005340.1 + 21400 0.66 0.647225
Target:  5'- aCCGGCuagugcGAGCauguGCAGCguuuuggcauaacgGGCAguGCAUCa -3'
miRNA:   3'- -GGUCGu-----UUUG----CGUCG--------------CCGUguCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 5587 0.66 0.638954
Target:  5'- aCAGCGAGuCGCucGCGGCAgAuauCAUCa -3'
miRNA:   3'- gGUCGUUUuGCGu-CGCCGUgUc--GUAG- -5'
25988 5' -52.9 NC_005340.1 + 29967 0.66 0.63659
Target:  5'- aCGGCGuuugcuauggucGACGUGGUGGCGguGCGUa -3'
miRNA:   3'- gGUCGUu-----------UUGCGUCGCCGUguCGUAg -5'
25988 5' -52.9 NC_005340.1 + 25939 0.66 0.631861
Target:  5'- gCAGgAAGACGCgAGCGccacaucagcaacgcGCGCAGCcguAUCg -3'
miRNA:   3'- gGUCgUUUUGCG-UCGC---------------CGUGUCG---UAG- -5'
25988 5' -52.9 NC_005340.1 + 25349 0.66 0.627133
Target:  5'- aCCGGCcAGACGUucacccgcuuuuAGCGGaACAGUcgCg -3'
miRNA:   3'- -GGUCGuUUUGCG------------UCGCCgUGUCGuaG- -5'
25988 5' -52.9 NC_005340.1 + 16623 0.66 0.627133
Target:  5'- aCAGCccgauuGCGCGGCGGUGCuGUuccagacgGUCg -3'
miRNA:   3'- gGUCGuuu---UGCGUCGCCGUGuCG--------UAG- -5'
25988 5' -52.9 NC_005340.1 + 20879 0.66 0.627133
Target:  5'- uCCAGCGc-ACGCAGgugcuucucuuuUGGCuggcguuuCAGCGUCa -3'
miRNA:   3'- -GGUCGUuuUGCGUC------------GCCGu-------GUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 7020 0.66 0.627133
Target:  5'- cCCGGCG----GCAGUcuGGCGCAGCcgguaGUCg -3'
miRNA:   3'- -GGUCGUuuugCGUCG--CCGUGUCG-----UAG- -5'
25988 5' -52.9 NC_005340.1 + 27779 0.66 0.627133
Target:  5'- aCAGCAAAugGaa-CGGCGcCAGCccGUCg -3'
miRNA:   3'- gGUCGUUUugCgucGCCGU-GUCG--UAG- -5'
25988 5' -52.9 NC_005340.1 + 16052 0.67 0.603518
Target:  5'- aUCGGUGAuACGC--UGGCGCAGgGUCa -3'
miRNA:   3'- -GGUCGUUuUGCGucGCCGUGUCgUAG- -5'
25988 5' -52.9 NC_005340.1 + 16365 0.67 0.603518
Target:  5'- aCCGGCGAAAuCGUGGCGGUcgaGGUgGUCa -3'
miRNA:   3'- -GGUCGUUUU-GCGUCGCCGug-UCG-UAG- -5'
25988 5' -52.9 NC_005340.1 + 24425 0.67 0.592922
Target:  5'- aCCAGCAAAgaaaaagccgcuaaGCGUAGCcGCACccuuaucaacgucaaAGCAUg -3'
miRNA:   3'- -GGUCGUUU--------------UGCGUCGcCGUG---------------UCGUAg -5'
25988 5' -52.9 NC_005340.1 + 28749 0.67 0.591747
Target:  5'- -gAGCAAAACGCAGC--UAUAGCGa- -3'
miRNA:   3'- ggUCGUUUUGCGUCGccGUGUCGUag -5'
25988 5' -52.9 NC_005340.1 + 2313 0.67 0.591747
Target:  5'- uCCAGUugguGCGUucauucuacccGGCGGCucGCGGUAUCc -3'
miRNA:   3'- -GGUCGuuu-UGCG-----------UCGCCG--UGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 17686 0.67 0.591747
Target:  5'- gCCGGUAAcauGGcCGCAGCaGGCGCuGCcgggGUCg -3'
miRNA:   3'- -GGUCGUU---UU-GCGUCG-CCGUGuCG----UAG- -5'
25988 5' -52.9 NC_005340.1 + 28383 0.67 0.580015
Target:  5'- cCCAGUcaccGGCGuCAGCGGCaucauggacgGCGGCAa- -3'
miRNA:   3'- -GGUCGuu--UUGC-GUCGCCG----------UGUCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.