miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25988 5' -52.9 NC_005340.1 + 16376 1.13 0.000341
Target:  5'- aCCAGCAAAACGCAGCGGCACAGCAUCa -3'
miRNA:   3'- -GGUCGUUUUGCGUCGCCGUGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 1572 0.75 0.201467
Target:  5'- gCGGCAAAAguCGCAGCGGCuAUAGCc-- -3'
miRNA:   3'- gGUCGUUUU--GCGUCGCCG-UGUCGuag -5'
25988 5' -52.9 NC_005340.1 + 17572 0.75 0.201468
Target:  5'- aUCAGCGAAACGa--CGGCGCAGCuuaAUCg -3'
miRNA:   3'- -GGUCGUUUUGCgucGCCGUGUCG---UAG- -5'
25988 5' -52.9 NC_005340.1 + 2143 0.75 0.213304
Target:  5'- aCCAGCAGcgGGCGCAGCgcuaccuaugaGGC-CAGCcgCa -3'
miRNA:   3'- -GGUCGUU--UUGCGUCG-----------CCGuGUCGuaG- -5'
25988 5' -52.9 NC_005340.1 + 8614 0.74 0.225733
Target:  5'- aCCGGCGcuGGCGCAgGCGGCGCGGg--- -3'
miRNA:   3'- -GGUCGUu-UUGCGU-CGCCGUGUCguag -5'
25988 5' -52.9 NC_005340.1 + 9490 0.73 0.266731
Target:  5'- aCCGGCAGgguacAGCGCA-UGGCGCGgguGCAUCa -3'
miRNA:   3'- -GGUCGUU-----UUGCGUcGCCGUGU---CGUAG- -5'
25988 5' -52.9 NC_005340.1 + 629 0.73 0.274122
Target:  5'- uCUGGUAAuacuUGCGGCGGaACAGCGUCg -3'
miRNA:   3'- -GGUCGUUuu--GCGUCGCCgUGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 16823 0.72 0.321928
Target:  5'- gUCAGUcuGGCgGCGGUGGCGCAGUccgaaGUCg -3'
miRNA:   3'- -GGUCGuuUUG-CGUCGCCGUGUCG-----UAG- -5'
25988 5' -52.9 NC_005340.1 + 8850 0.72 0.325327
Target:  5'- gCAGCAuaucgggguuguuucGGA-GCuGCGGCACGGCGUUa -3'
miRNA:   3'- gGUCGU---------------UUUgCGuCGCCGUGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 6340 0.71 0.34807
Target:  5'- aCCGGCAucGCGCAGaCGcaGUGCGGCAa- -3'
miRNA:   3'- -GGUCGUuuUGCGUC-GC--CGUGUCGUag -5'
25988 5' -52.9 NC_005340.1 + 17600 0.71 0.357115
Target:  5'- gCCAGCGuGAgGCAcUGGCGC-GCGUCa -3'
miRNA:   3'- -GGUCGUuUUgCGUcGCCGUGuCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 27694 0.71 0.366324
Target:  5'- aUCAGCu---CGCAGCGGCguaucGCAGgGUUa -3'
miRNA:   3'- -GGUCGuuuuGCGUCGCCG-----UGUCgUAG- -5'
25988 5' -52.9 NC_005340.1 + 9273 0.71 0.375695
Target:  5'- aCCGGUAAGGCGCuccuGCaGCGCGGUuaacUCa -3'
miRNA:   3'- -GGUCGUUUUGCGu---CGcCGUGUCGu---AG- -5'
25988 5' -52.9 NC_005340.1 + 872 0.71 0.375695
Target:  5'- aCCGGCAAAAUaCAccCGGCGCGGgGUCg -3'
miRNA:   3'- -GGUCGUUUUGcGUc-GCCGUGUCgUAG- -5'
25988 5' -52.9 NC_005340.1 + 20471 0.7 0.384266
Target:  5'- aCCAuuGCAAAGCGUAacaaacuGaCGGC-CAGCGUCg -3'
miRNA:   3'- -GGU--CGUUUUGCGU-------C-GCCGuGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 937 0.7 0.404762
Target:  5'- uUCGGUAAcGCcuuucuugaGCAGCGcCACAGCGUCa -3'
miRNA:   3'- -GGUCGUUuUG---------CGUCGCcGUGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 26984 0.7 0.424911
Target:  5'- uCCAGCAca--GCAGCGGUGCGauaaaCAUCa -3'
miRNA:   3'- -GGUCGUuuugCGUCGCCGUGUc----GUAG- -5'
25988 5' -52.9 NC_005340.1 + 10606 0.69 0.445647
Target:  5'- aUCAGCuuuGAGCGCGGCGaCACuGGCGa- -3'
miRNA:   3'- -GGUCGu--UUUGCGUCGCcGUG-UCGUag -5'
25988 5' -52.9 NC_005340.1 + 10067 0.69 0.445647
Target:  5'- aCCGGU---GCGCuGaCGGUcaGCGGCAUCa -3'
miRNA:   3'- -GGUCGuuuUGCGuC-GCCG--UGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 867 0.69 0.445647
Target:  5'- gCCGGU--GACGCuGUGGCGCuGC-UCa -3'
miRNA:   3'- -GGUCGuuUUGCGuCGCCGUGuCGuAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.