miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25988 5' -52.9 NC_005340.1 + 867 0.69 0.445647
Target:  5'- gCCGGU--GACGCuGUGGCGCuGC-UCa -3'
miRNA:   3'- -GGUCGuuUUGCGuCGCCGUGuCGuAG- -5'
25988 5' -52.9 NC_005340.1 + 26028 0.69 0.456225
Target:  5'- aCGGgAAGGCGCAGCGaUACGGCu-- -3'
miRNA:   3'- gGUCgUUUUGCGUCGCcGUGUCGuag -5'
25988 5' -52.9 NC_005340.1 + 11515 0.69 0.456225
Target:  5'- uUCAGCGGGugGagcuGGCGGCACcGGUcgCg -3'
miRNA:   3'- -GGUCGUUUugCg---UCGCCGUG-UCGuaG- -5'
25988 5' -52.9 NC_005340.1 + 9314 0.69 0.456225
Target:  5'- gUCAGCAGcAGCGCAucaGGCgACAGCAg- -3'
miRNA:   3'- -GGUCGUU-UUGCGUcg-CCG-UGUCGUag -5'
25988 5' -52.9 NC_005340.1 + 12292 0.69 0.477776
Target:  5'- gCCGGUcAGACGCAGCuuguuaaugaGGUcUGGCGUCa -3'
miRNA:   3'- -GGUCGuUUUGCGUCG----------CCGuGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 20642 0.68 0.511007
Target:  5'- gCCGGUAGuGCGCuGaCGGC-CAGCGg- -3'
miRNA:   3'- -GGUCGUUuUGCGuC-GCCGuGUCGUag -5'
25988 5' -52.9 NC_005340.1 + 8742 0.68 0.511007
Target:  5'- aCCuGCAGcGCGCAgGCGGU-CAGCGc- -3'
miRNA:   3'- -GGuCGUUuUGCGU-CGCCGuGUCGUag -5'
25988 5' -52.9 NC_005340.1 + 17927 0.68 0.533686
Target:  5'- aUCAGCAGAA-GCGGCGGUAUugucaccgagcuGGCGc- -3'
miRNA:   3'- -GGUCGUUUUgCGUCGCCGUG------------UCGUag -5'
25988 5' -52.9 NC_005340.1 + 13036 0.68 0.54516
Target:  5'- aCC-GCuuucGGCGUuGCGGC-CAGCGUCu -3'
miRNA:   3'- -GGuCGuu--UUGCGuCGCCGuGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 6136 0.68 0.54516
Target:  5'- aCCGGCGAcccacGGCGCAuagaaCGGCAgCAGC-UCg -3'
miRNA:   3'- -GGUCGUU-----UUGCGUc----GCCGU-GUCGuAG- -5'
25988 5' -52.9 NC_005340.1 + 6963 0.67 0.556712
Target:  5'- gCCGGUucuGAugGCA-UGGCGCAggcgcGCAUCg -3'
miRNA:   3'- -GGUCGu--UUugCGUcGCCGUGU-----CGUAG- -5'
25988 5' -52.9 NC_005340.1 + 14 0.67 0.556712
Target:  5'- -aAGCAuuGCGCgccAGCGGUGguGCGUa -3'
miRNA:   3'- ggUCGUuuUGCG---UCGCCGUguCGUAg -5'
25988 5' -52.9 NC_005340.1 + 6030 0.67 0.556712
Target:  5'- aCCAGCAucugcucauAgGCGGUugcauGGCGCAGCGg- -3'
miRNA:   3'- -GGUCGUuu-------UgCGUCG-----CCGUGUCGUag -5'
25988 5' -52.9 NC_005340.1 + 28383 0.67 0.580015
Target:  5'- cCCAGUcaccGGCGuCAGCGGCaucauggacgGCGGCAa- -3'
miRNA:   3'- -GGUCGuu--UUGC-GUCGCCG----------UGUCGUag -5'
25988 5' -52.9 NC_005340.1 + 2313 0.67 0.591747
Target:  5'- uCCAGUugguGCGUucauucuacccGGCGGCucGCGGUAUCc -3'
miRNA:   3'- -GGUCGuuu-UGCG-----------UCGCCG--UGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 17686 0.67 0.591747
Target:  5'- gCCGGUAAcauGGcCGCAGCaGGCGCuGCcgggGUCg -3'
miRNA:   3'- -GGUCGUU---UU-GCGUCG-CCGUGuCG----UAG- -5'
25988 5' -52.9 NC_005340.1 + 28749 0.67 0.591747
Target:  5'- -gAGCAAAACGCAGC--UAUAGCGa- -3'
miRNA:   3'- ggUCGUUUUGCGUCGccGUGUCGUag -5'
25988 5' -52.9 NC_005340.1 + 24425 0.67 0.592922
Target:  5'- aCCAGCAAAgaaaaagccgcuaaGCGUAGCcGCACccuuaucaacgucaaAGCAUg -3'
miRNA:   3'- -GGUCGUUU--------------UGCGUCGcCGUG---------------UCGUAg -5'
25988 5' -52.9 NC_005340.1 + 16365 0.67 0.603518
Target:  5'- aCCGGCGAAAuCGUGGCGGUcgaGGUgGUCa -3'
miRNA:   3'- -GGUCGUUUU-GCGUCGCCGug-UCG-UAG- -5'
25988 5' -52.9 NC_005340.1 + 16052 0.67 0.603518
Target:  5'- aUCGGUGAuACGC--UGGCGCAGgGUCa -3'
miRNA:   3'- -GGUCGUUuUGCGucGCCGUGUCgUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.