miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25988 5' -52.9 NC_005340.1 + 9273 0.71 0.375695
Target:  5'- aCCGGUAAGGCGCuccuGCaGCGCGGUuaacUCa -3'
miRNA:   3'- -GGUCGUUUUGCGu---CGcCGUGUCGu---AG- -5'
25988 5' -52.9 NC_005340.1 + 9314 0.69 0.456225
Target:  5'- gUCAGCAGcAGCGCAucaGGCgACAGCAg- -3'
miRNA:   3'- -GGUCGUU-UUGCGUcg-CCG-UGUCGUag -5'
25988 5' -52.9 NC_005340.1 + 9490 0.73 0.266731
Target:  5'- aCCGGCAGgguacAGCGCA-UGGCGCGgguGCAUCa -3'
miRNA:   3'- -GGUCGUU-----UUGCGUcGCCGUGU---CGUAG- -5'
25988 5' -52.9 NC_005340.1 + 10067 0.69 0.445647
Target:  5'- aCCGGU---GCGCuGaCGGUcaGCGGCAUCa -3'
miRNA:   3'- -GGUCGuuuUGCGuC-GCCG--UGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 10606 0.69 0.445647
Target:  5'- aUCAGCuuuGAGCGCGGCGaCACuGGCGa- -3'
miRNA:   3'- -GGUCGu--UUUGCGUCGCcGUG-UCGUag -5'
25988 5' -52.9 NC_005340.1 + 11096 0.65 0.671974
Target:  5'- aCAGCAggcuuuugaggggcuGAGCGUGGCGGgGucugucgggucguacCAGUAUCa -3'
miRNA:   3'- gGUCGU---------------UUUGCGUCGCCgU---------------GUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 11515 0.69 0.456225
Target:  5'- uUCAGCGGGugGagcuGGCGGCACcGGUcgCg -3'
miRNA:   3'- -GGUCGUUUugCg---UCGCCGUG-UCGuaG- -5'
25988 5' -52.9 NC_005340.1 + 12254 0.66 0.650768
Target:  5'- cCCGGCAuGGugGCcgcagcaagcuuAGCGGCucCGGCAg- -3'
miRNA:   3'- -GGUCGU-UUugCG------------UCGCCGu-GUCGUag -5'
25988 5' -52.9 NC_005340.1 + 12292 0.69 0.477776
Target:  5'- gCCGGUcAGACGCAGCuuguuaaugaGGUcUGGCGUCa -3'
miRNA:   3'- -GGUCGuUUUGCGUCG----------CCGuGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 13036 0.68 0.54516
Target:  5'- aCC-GCuuucGGCGUuGCGGC-CAGCGUCu -3'
miRNA:   3'- -GGuCGuu--UUGCGuCGCCGuGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 16052 0.67 0.603518
Target:  5'- aUCGGUGAuACGC--UGGCGCAGgGUCa -3'
miRNA:   3'- -GGUCGUUuUGCGucGCCGUGUCgUAG- -5'
25988 5' -52.9 NC_005340.1 + 16365 0.67 0.603518
Target:  5'- aCCGGCGAAAuCGUGGCGGUcgaGGUgGUCa -3'
miRNA:   3'- -GGUCGUUUU-GCGUCGCCGug-UCG-UAG- -5'
25988 5' -52.9 NC_005340.1 + 16376 1.13 0.000341
Target:  5'- aCCAGCAAAACGCAGCGGCACAGCAUCa -3'
miRNA:   3'- -GGUCGUUUUGCGUCGCCGUGUCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 16623 0.66 0.627133
Target:  5'- aCAGCccgauuGCGCGGCGGUGCuGUuccagacgGUCg -3'
miRNA:   3'- gGUCGuuu---UGCGUCGCCGUGuCG--------UAG- -5'
25988 5' -52.9 NC_005340.1 + 16823 0.72 0.321928
Target:  5'- gUCAGUcuGGCgGCGGUGGCGCAGUccgaaGUCg -3'
miRNA:   3'- -GGUCGuuUUG-CGUCGCCGUGUCG-----UAG- -5'
25988 5' -52.9 NC_005340.1 + 17572 0.75 0.201468
Target:  5'- aUCAGCGAAACGa--CGGCGCAGCuuaAUCg -3'
miRNA:   3'- -GGUCGUUUUGCgucGCCGUGUCG---UAG- -5'
25988 5' -52.9 NC_005340.1 + 17600 0.71 0.357115
Target:  5'- gCCAGCGuGAgGCAcUGGCGC-GCGUCa -3'
miRNA:   3'- -GGUCGUuUUgCGUcGCCGUGuCGUAG- -5'
25988 5' -52.9 NC_005340.1 + 17686 0.67 0.591747
Target:  5'- gCCGGUAAcauGGcCGCAGCaGGCGCuGCcgggGUCg -3'
miRNA:   3'- -GGUCGUU---UU-GCGUCG-CCGUGuCG----UAG- -5'
25988 5' -52.9 NC_005340.1 + 17927 0.68 0.533686
Target:  5'- aUCAGCAGAA-GCGGCGGUAUugucaccgagcuGGCGc- -3'
miRNA:   3'- -GGUCGUUUUgCGUCGCCGUG------------UCGUag -5'
25988 5' -52.9 NC_005340.1 + 20471 0.7 0.384266
Target:  5'- aCCAuuGCAAAGCGUAacaaacuGaCGGC-CAGCGUCg -3'
miRNA:   3'- -GGU--CGUUUUGCGU-------C-GCCGuGUCGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.