Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25988 | 5' | -52.9 | NC_005340.1 | + | 29967 | 0.66 | 0.63659 |
Target: 5'- aCGGCGuuugcuauggucGACGUGGUGGCGguGCGUa -3' miRNA: 3'- gGUCGUu-----------UUGCGUCGCCGUguCGUAg -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 28749 | 0.67 | 0.591747 |
Target: 5'- -gAGCAAAACGCAGC--UAUAGCGa- -3' miRNA: 3'- ggUCGUUUUGCGUCGccGUGUCGUag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 28383 | 0.67 | 0.580015 |
Target: 5'- cCCAGUcaccGGCGuCAGCGGCaucauggacgGCGGCAa- -3' miRNA: 3'- -GGUCGuu--UUGC-GUCGCCG----------UGUCGUag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 27779 | 0.66 | 0.627133 |
Target: 5'- aCAGCAAAugGaa-CGGCGcCAGCccGUCg -3' miRNA: 3'- gGUCGUUUugCgucGCCGU-GUCG--UAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 27694 | 0.71 | 0.366324 |
Target: 5'- aUCAGCu---CGCAGCGGCguaucGCAGgGUUa -3' miRNA: 3'- -GGUCGuuuuGCGUCGCCG-----UGUCgUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 26984 | 0.7 | 0.424911 |
Target: 5'- uCCAGCAca--GCAGCGGUGCGauaaaCAUCa -3' miRNA: 3'- -GGUCGUuuugCGUCGCCGUGUc----GUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 26028 | 0.69 | 0.456225 |
Target: 5'- aCGGgAAGGCGCAGCGaUACGGCu-- -3' miRNA: 3'- gGUCgUUUUGCGUCGCcGUGUCGuag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 25939 | 0.66 | 0.631861 |
Target: 5'- gCAGgAAGACGCgAGCGccacaucagcaacgcGCGCAGCcguAUCg -3' miRNA: 3'- gGUCgUUUUGCG-UCGC---------------CGUGUCG---UAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 25349 | 0.66 | 0.627133 |
Target: 5'- aCCGGCcAGACGUucacccgcuuuuAGCGGaACAGUcgCg -3' miRNA: 3'- -GGUCGuUUUGCG------------UCGCCgUGUCGuaG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 24425 | 0.67 | 0.592922 |
Target: 5'- aCCAGCAAAgaaaaagccgcuaaGCGUAGCcGCACccuuaucaacgucaaAGCAUg -3' miRNA: 3'- -GGUCGUUU--------------UGCGUCGcCGUG---------------UCGUAg -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 21400 | 0.66 | 0.647225 |
Target: 5'- aCCGGCuagugcGAGCauguGCAGCguuuuggcauaacgGGCAguGCAUCa -3' miRNA: 3'- -GGUCGu-----UUUG----CGUCG--------------CCGUguCGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 20879 | 0.66 | 0.627133 |
Target: 5'- uCCAGCGc-ACGCAGgugcuucucuuuUGGCuggcguuuCAGCGUCa -3' miRNA: 3'- -GGUCGUuuUGCGUC------------GCCGu-------GUCGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 20642 | 0.68 | 0.511007 |
Target: 5'- gCCGGUAGuGCGCuGaCGGC-CAGCGg- -3' miRNA: 3'- -GGUCGUUuUGCGuC-GCCGuGUCGUag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 20471 | 0.7 | 0.384266 |
Target: 5'- aCCAuuGCAAAGCGUAacaaacuGaCGGC-CAGCGUCg -3' miRNA: 3'- -GGU--CGUUUUGCGU-------C-GCCGuGUCGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 17927 | 0.68 | 0.533686 |
Target: 5'- aUCAGCAGAA-GCGGCGGUAUugucaccgagcuGGCGc- -3' miRNA: 3'- -GGUCGUUUUgCGUCGCCGUG------------UCGUag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 17686 | 0.67 | 0.591747 |
Target: 5'- gCCGGUAAcauGGcCGCAGCaGGCGCuGCcgggGUCg -3' miRNA: 3'- -GGUCGUU---UU-GCGUCG-CCGUGuCG----UAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 17600 | 0.71 | 0.357115 |
Target: 5'- gCCAGCGuGAgGCAcUGGCGC-GCGUCa -3' miRNA: 3'- -GGUCGUuUUgCGUcGCCGUGuCGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 17572 | 0.75 | 0.201468 |
Target: 5'- aUCAGCGAAACGa--CGGCGCAGCuuaAUCg -3' miRNA: 3'- -GGUCGUUUUGCgucGCCGUGUCG---UAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 16823 | 0.72 | 0.321928 |
Target: 5'- gUCAGUcuGGCgGCGGUGGCGCAGUccgaaGUCg -3' miRNA: 3'- -GGUCGuuUUG-CGUCGCCGUGUCG-----UAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 16623 | 0.66 | 0.627133 |
Target: 5'- aCAGCccgauuGCGCGGCGGUGCuGUuccagacgGUCg -3' miRNA: 3'- gGUCGuuu---UGCGUCGCCGUGuCG--------UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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