Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25988 | 5' | -52.9 | NC_005340.1 | + | 16376 | 1.13 | 0.000341 |
Target: 5'- aCCAGCAAAACGCAGCGGCACAGCAUCa -3' miRNA: 3'- -GGUCGUUUUGCGUCGCCGUGUCGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 6963 | 0.67 | 0.556712 |
Target: 5'- gCCGGUucuGAugGCA-UGGCGCAggcgcGCAUCg -3' miRNA: 3'- -GGUCGu--UUugCGUcGCCGUGU-----CGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 28383 | 0.67 | 0.580015 |
Target: 5'- cCCAGUcaccGGCGuCAGCGGCaucauggacgGCGGCAa- -3' miRNA: 3'- -GGUCGuu--UUGC-GUCGCCG----------UGUCGUag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 6460 | 0.66 | 0.650768 |
Target: 5'- aCCGGCAucACGCAG-GGUcaGGCcgGUCa -3' miRNA: 3'- -GGUCGUuuUGCGUCgCCGugUCG--UAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 8850 | 0.72 | 0.325327 |
Target: 5'- gCAGCAuaucgggguuguuucGGA-GCuGCGGCACGGCGUUa -3' miRNA: 3'- gGUCGU---------------UUUgCGuCGCCGUGUCGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 6340 | 0.71 | 0.34807 |
Target: 5'- aCCGGCAucGCGCAGaCGcaGUGCGGCAa- -3' miRNA: 3'- -GGUCGUuuUGCGUC-GC--CGUGUCGUag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 9273 | 0.71 | 0.375695 |
Target: 5'- aCCGGUAAGGCGCuccuGCaGCGCGGUuaacUCa -3' miRNA: 3'- -GGUCGUUUUGCGu---CGcCGUGUCGu---AG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 872 | 0.71 | 0.375695 |
Target: 5'- aCCGGCAAAAUaCAccCGGCGCGGgGUCg -3' miRNA: 3'- -GGUCGUUUUGcGUc-GCCGUGUCgUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 3625 | 0.69 | 0.445647 |
Target: 5'- aCAGC---GCGaCGGCuGGgACGGCAUCg -3' miRNA: 3'- gGUCGuuuUGC-GUCG-CCgUGUCGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 6136 | 0.68 | 0.54516 |
Target: 5'- aCCGGCGAcccacGGCGCAuagaaCGGCAgCAGC-UCg -3' miRNA: 3'- -GGUCGUU-----UUGCGUc----GCCGU-GUCGuAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 8742 | 0.68 | 0.511007 |
Target: 5'- aCCuGCAGcGCGCAgGCGGU-CAGCGc- -3' miRNA: 3'- -GGuCGUUuUGCGU-CGCCGuGUCGUag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 26984 | 0.7 | 0.424911 |
Target: 5'- uCCAGCAca--GCAGCGGUGCGauaaaCAUCa -3' miRNA: 3'- -GGUCGUuuugCGUCGCCGUGUc----GUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 1572 | 0.75 | 0.201467 |
Target: 5'- gCGGCAAAAguCGCAGCGGCuAUAGCc-- -3' miRNA: 3'- gGUCGUUUU--GCGUCGCCG-UGUCGuag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 17927 | 0.68 | 0.533686 |
Target: 5'- aUCAGCAGAA-GCGGCGGUAUugucaccgagcuGGCGc- -3' miRNA: 3'- -GGUCGUUUUgCGUCGCCGUG------------UCGUag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 2143 | 0.75 | 0.213304 |
Target: 5'- aCCAGCAGcgGGCGCAGCgcuaccuaugaGGC-CAGCcgCa -3' miRNA: 3'- -GGUCGUU--UUGCGUCG-----------CCGuGUCGuaG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 937 | 0.7 | 0.404762 |
Target: 5'- uUCGGUAAcGCcuuucuugaGCAGCGcCACAGCGUCa -3' miRNA: 3'- -GGUCGUUuUG---------CGUCGCcGUGUCGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 13036 | 0.68 | 0.54516 |
Target: 5'- aCC-GCuuucGGCGUuGCGGC-CAGCGUCu -3' miRNA: 3'- -GGuCGuu--UUGCGuCGCCGuGUCGUAG- -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 6030 | 0.67 | 0.556712 |
Target: 5'- aCCAGCAucugcucauAgGCGGUugcauGGCGCAGCGg- -3' miRNA: 3'- -GGUCGUuu-------UgCGUCG-----CCGUGUCGUag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 8614 | 0.74 | 0.225733 |
Target: 5'- aCCGGCGcuGGCGCAgGCGGCGCGGg--- -3' miRNA: 3'- -GGUCGUu-UUGCGU-CGCCGUGUCguag -5' |
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25988 | 5' | -52.9 | NC_005340.1 | + | 27694 | 0.71 | 0.366324 |
Target: 5'- aUCAGCu---CGCAGCGGCguaucGCAGgGUUa -3' miRNA: 3'- -GGUCGuuuuGCGUCGCCG-----UGUCgUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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