miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26001 3' -57 NC_005340.1 + 27215 0.66 0.452768
Target:  5'- uCGGCGCG----UGACAUGUCCGGgAg -3'
miRNA:   3'- cGCCGCGCucauGCUGUGUAGGCCgU- -5'
26001 3' -57 NC_005340.1 + 8599 0.67 0.43278
Target:  5'- gGCGGCGCGGGUgugcagccuGCGcACAgCAUCaGGgAg -3'
miRNA:   3'- -CGCCGCGCUCA---------UGC-UGU-GUAGgCCgU- -5'
26001 3' -57 NC_005340.1 + 24350 0.67 0.413316
Target:  5'- cGUGGCGUuAGcgaGCGuCugGUCUGGCAa -3'
miRNA:   3'- -CGCCGCGcUCa--UGCuGugUAGGCCGU- -5'
26001 3' -57 NC_005340.1 + 15785 0.67 0.407583
Target:  5'- cGCGGUGCGAguguaGUucucaaacagaaaaaGCGGguCAUCCGaGCAg -3'
miRNA:   3'- -CGCCGCGCU-----CA---------------UGCUguGUAGGC-CGU- -5'
26001 3' -57 NC_005340.1 + 20270 0.69 0.324568
Target:  5'- cGCGGgGCG-GUGCuGACGCuguggcuuggCUGGCAg -3'
miRNA:   3'- -CGCCgCGCuCAUG-CUGUGua--------GGCCGU- -5'
26001 3' -57 NC_005340.1 + 26156 0.69 0.324568
Target:  5'- aGCGGCGCGuauuugggauaaAGcccauCGAgGCAUCgCGGCGu -3'
miRNA:   3'- -CGCCGCGC------------UCau---GCUgUGUAG-GCCGU- -5'
26001 3' -57 NC_005340.1 + 28199 0.71 0.231536
Target:  5'- gGCGGCGCGc---UGGCACAUCCGuCAg -3'
miRNA:   3'- -CGCCGCGCucauGCUGUGUAGGCcGU- -5'
26001 3' -57 NC_005340.1 + 28325 0.72 0.207809
Target:  5'- cGCGGCcucgguaucaGCGAG-ACGACGCAauUCaCGGUAg -3'
miRNA:   3'- -CGCCG----------CGCUCaUGCUGUGU--AG-GCCGU- -5'
26001 3' -57 NC_005340.1 + 7447 0.77 0.08608
Target:  5'- aCGG-GUGAagACGGCACAUCCGGCAg -3'
miRNA:   3'- cGCCgCGCUcaUGCUGUGUAGGCCGU- -5'
26001 3' -57 NC_005340.1 + 2436 1.1 0.0003
Target:  5'- gGCGGCGCGAGUACGACACAUCCGGCAc -3'
miRNA:   3'- -CGCCGCGCUCAUGCUGUGUAGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.