miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26021 5' -60.4 NC_005342.2 + 22866 0.7 0.243821
Target:  5'- cGGCGauCGGCGCGAUCguacugGCGCUCGugaCGAg -3'
miRNA:   3'- -CCGCc-GCCGUGCUAG------CGCGAGUg--GCU- -5'
26021 5' -60.4 NC_005342.2 + 28597 0.7 0.231256
Target:  5'- aGCGcucguGCcGCACGGUCGCGCUCggcgcagGCCGGc -3'
miRNA:   3'- cCGC-----CGcCGUGCUAGCGCGAG-------UGGCU- -5'
26021 5' -60.4 NC_005342.2 + 20224 0.73 0.161715
Target:  5'- uGGCGGCgaucgaccgcgacuGGCcuACGAUCGCGCcgcacaucgacuccuUCAUCGAa -3'
miRNA:   3'- -CCGCCG--------------CCG--UGCUAGCGCG---------------AGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 19624 0.74 0.137438
Target:  5'- cGCGGCGaGCGCGGcCGaCGCUgGCCGu -3'
miRNA:   3'- cCGCCGC-CGUGCUaGC-GCGAgUGGCu -5'
26021 5' -60.4 NC_005342.2 + 9165 0.68 0.311532
Target:  5'- cGCGaCGGCAguguCGAUCGCGgugcgCACCGAc -3'
miRNA:   3'- cCGCcGCCGU----GCUAGCGCga---GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 30412 0.69 0.27874
Target:  5'- cGGCGGCGGCAacuUCGUccuggaagcuggcgaGCUCgGCCGu -3'
miRNA:   3'- -CCGCCGCCGUgcuAGCG---------------CGAG-UGGCu -5'
26021 5' -60.4 NC_005342.2 + 3285 0.71 0.217013
Target:  5'- cGCGGCGGCGCGcgguugaauuaaacuAUCGC-UUCGCgCGAu -3'
miRNA:   3'- cCGCCGCCGUGC---------------UAGCGcGAGUG-GCU- -5'
26021 5' -60.4 NC_005342.2 + 25124 0.74 0.126766
Target:  5'- cGGCGGCGcGCACGuUCGCGgcCUgcccgauacCACCGAu -3'
miRNA:   3'- -CCGCCGC-CGUGCuAGCGC--GA---------GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 27192 0.69 0.276022
Target:  5'- uGUGGCGGCAgacCGugcuUCGCGCgguacaUCGCCGu -3'
miRNA:   3'- cCGCCGCCGU---GCu---AGCGCG------AGUGGCu -5'
26021 5' -60.4 NC_005342.2 + 41738 0.79 0.060162
Target:  5'- aGCGcGCGGCcaACGAgcggggCGUGCUCGCCGAa -3'
miRNA:   3'- cCGC-CGCCG--UGCUa-----GCGCGAGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 1346 0.71 0.222052
Target:  5'- cGGCGGCGGCcuugaacgaacgcAUGAagcCGCGCUUguacucauaccgcuuGCCGAc -3'
miRNA:   3'- -CCGCCGCCG-------------UGCUa--GCGCGAG---------------UGGCU- -5'
26021 5' -60.4 NC_005342.2 + 11790 0.7 0.26275
Target:  5'- cGCGGCcaucaGCGCGAcggCGCGCUCcagcuugcGCCGGu -3'
miRNA:   3'- cCGCCGc----CGUGCUa--GCGCGAG--------UGGCU- -5'
26021 5' -60.4 NC_005342.2 + 13941 0.72 0.193771
Target:  5'- gGGcCGGCGGC-CGGUgCGCGCgaGCUGAg -3'
miRNA:   3'- -CC-GCCGCCGuGCUA-GCGCGagUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 40441 0.72 0.169585
Target:  5'- cGGCGGCGGCAa-GUCGCuccugaacgcgauGCUgAUCGAg -3'
miRNA:   3'- -CCGCCGCCGUgcUAGCG-------------CGAgUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 665 0.73 0.148929
Target:  5'- -uCGGUGaGCGCGAUCGUGC-CGCCGc -3'
miRNA:   3'- ccGCCGC-CGUGCUAGCGCGaGUGGCu -5'
26021 5' -60.4 NC_005342.2 + 10620 0.73 0.145004
Target:  5'- uGGCGGCGaagaaaggugacGuCACGGUCGCGCcgGCCGGu -3'
miRNA:   3'- -CCGCCGC------------C-GUGCUAGCGCGagUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 23690 0.68 0.334454
Target:  5'- uGGcCGGCGGaaaaccgaGCGAUUG-GCUCGCgCGGg -3'
miRNA:   3'- -CC-GCCGCCg-------UGCUAGCgCGAGUG-GCU- -5'
26021 5' -60.4 NC_005342.2 + 2671 0.68 0.319038
Target:  5'- cGGCGGCGGC-CGAcaggcCGaGCUCGUCGGc -3'
miRNA:   3'- -CCGCCGCCGuGCUa----GCgCGAGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 25313 0.69 0.303432
Target:  5'- cGGCGaCGGCcgcgacguacguaACGGUCGCGUU-GCCGGu -3'
miRNA:   3'- -CCGCcGCCG-------------UGCUAGCGCGAgUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 40751 0.69 0.289121
Target:  5'- -aCGGCGcGCACGAucgucgacacguuUCGCGC-CGCCa- -3'
miRNA:   3'- ccGCCGC-CGUGCU-------------AGCGCGaGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.