miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26021 5' -60.4 NC_005342.2 + 15256 0.82 0.032941
Target:  5'- uGCGGCGGCGCGGUCagcaucagcaccggGCGCUUGCCGu -3'
miRNA:   3'- cCGCCGCCGUGCUAG--------------CGCGAGUGGCu -5'
26021 5' -60.4 NC_005342.2 + 3285 0.71 0.217013
Target:  5'- cGCGGCGGCGCGcgguugaauuaaacuAUCGC-UUCGCgCGAu -3'
miRNA:   3'- cCGCCGCCGUGC---------------UAGCGcGAGUG-GCU- -5'
26021 5' -60.4 NC_005342.2 + 28597 0.7 0.231256
Target:  5'- aGCGcucguGCcGCACGGUCGCGCUCggcgcagGCCGGc -3'
miRNA:   3'- cCGC-----CGcCGUGCUAGCGCGAG-------UGGCU- -5'
26021 5' -60.4 NC_005342.2 + 39389 0.66 0.456952
Target:  5'- aGGCGGCGcGCuuccUGGUCggccugccuGCGC-CACUGAc -3'
miRNA:   3'- -CCGCCGC-CGu---GCUAG---------CGCGaGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 10620 0.73 0.145004
Target:  5'- uGGCGGCGaagaaaggugacGuCACGGUCGCGCcgGCCGGu -3'
miRNA:   3'- -CCGCCGC------------C-GUGCUAGCGCGagUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 38983 0.73 0.145004
Target:  5'- aGGCGcacGCGcGCGCGAUCGCagguuggcuGCUCACCc- -3'
miRNA:   3'- -CCGC---CGC-CGUGCUAGCG---------CGAGUGGcu -5'
26021 5' -60.4 NC_005342.2 + 665 0.73 0.148929
Target:  5'- -uCGGUGaGCGCGAUCGUGC-CGCCGc -3'
miRNA:   3'- ccGCCGC-CGUGCUAGCGCGaGUGGCu -5'
26021 5' -60.4 NC_005342.2 + 8965 0.73 0.148929
Target:  5'- cGCGGCGGCGacCGAcgCGCGUUCGCgGc -3'
miRNA:   3'- cCGCCGCCGU--GCUa-GCGCGAGUGgCu -5'
26021 5' -60.4 NC_005342.2 + 40441 0.72 0.169585
Target:  5'- cGGCGGCGGCAa-GUCGCuccugaacgcgauGCUgAUCGAg -3'
miRNA:   3'- -CCGCCGCCGUgcUAGCG-------------CGAgUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 2601 0.71 0.20937
Target:  5'- aGGCcGaCcGCGCGGuucaUCGCGCUCGCCGGc -3'
miRNA:   3'- -CCGcC-GcCGUGCU----AGCGCGAGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 11318 0.72 0.190776
Target:  5'- --aGGCGGCGCGGUucgucgucaccuugcCGCGCUCGaCGAg -3'
miRNA:   3'- ccgCCGCCGUGCUA---------------GCGCGAGUgGCU- -5'
26021 5' -60.4 NC_005342.2 + 20224 0.73 0.161715
Target:  5'- uGGCGGCgaucgaccgcgacuGGCcuACGAUCGCGCcgcacaucgacuccuUCAUCGAa -3'
miRNA:   3'- -CCGCCG--------------CCG--UGCUAGCGCG---------------AGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 41738 0.79 0.060162
Target:  5'- aGCGcGCGGCcaACGAgcggggCGUGCUCGCCGAa -3'
miRNA:   3'- cCGC-CGCCG--UGCUa-----GCGCGAGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 13941 0.72 0.193771
Target:  5'- gGGcCGGCGGC-CGGUgCGCGCgaGCUGAg -3'
miRNA:   3'- -CC-GCCGCCGuGCUA-GCGCGagUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 25124 0.74 0.126766
Target:  5'- cGGCGGCGcGCACGuUCGCGgcCUgcccgauacCACCGAu -3'
miRNA:   3'- -CCGCCGC-CGUGCuAGCGC--GA---------GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 41428 0.73 0.160011
Target:  5'- gGGCGGCacGGCGCGAUCaacgaggagaucgGCGCgggcgacucgcgCGCCGGg -3'
miRNA:   3'- -CCGCCG--CCGUGCUAG-------------CGCGa-----------GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 39043 0.72 0.193771
Target:  5'- cGGCGGCGGCGCGcuucuaCGaCGCaccgcaggcauUCAUCGAc -3'
miRNA:   3'- -CCGCCGCCGUGCua----GC-GCG-----------AGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 1346 0.71 0.222052
Target:  5'- cGGCGGCGGCcuugaacgaacgcAUGAagcCGCGCUUguacucauaccgcuuGCCGAc -3'
miRNA:   3'- -CCGCCGCCG-------------UGCUa--GCGCGAG---------------UGGCU- -5'
26021 5' -60.4 NC_005342.2 + 19624 0.74 0.137438
Target:  5'- cGCGGCGaGCGCGGcCGaCGCUgGCCGu -3'
miRNA:   3'- cCGCCGC-CGUGCUaGC-GCGAgUGGCu -5'
26021 5' -60.4 NC_005342.2 + 47844 0.73 0.148929
Target:  5'- aGGCgcaGGCGGCAacCGggCGCGCgcaccgCGCCGGc -3'
miRNA:   3'- -CCG---CCGCCGU--GCuaGCGCGa-----GUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.