miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26021 5' -60.4 NC_005342.2 + 47287 1.1 0.000254
Target:  5'- gGGCGGCGGCACGAUCGCGCUCACCGAg -3'
miRNA:   3'- -CCGCCGCCGUGCUAGCGCGAGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 27455 0.83 0.030503
Target:  5'- cGGCGGCGGCcggcaGCGGUUGCGCggcagcCGCCGGg -3'
miRNA:   3'- -CCGCCGCCG-----UGCUAGCGCGa-----GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 15256 0.82 0.032941
Target:  5'- uGCGGCGGCGCGGUCagcaucagcaccggGCGCUUGCCGu -3'
miRNA:   3'- cCGCCGCCGUGCUAG--------------CGCGAGUGGCu -5'
26021 5' -60.4 NC_005342.2 + 41738 0.79 0.060162
Target:  5'- aGCGcGCGGCcaACGAgcggggCGUGCUCGCCGAa -3'
miRNA:   3'- cCGC-CGCCG--UGCUa-----GCGCGAGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 18347 0.77 0.075233
Target:  5'- cGCGcGUGGCcCGAUCGCGCagcgcuUCGCCGAc -3'
miRNA:   3'- cCGC-CGCCGuGCUAGCGCG------AGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 18272 0.77 0.079534
Target:  5'- uGGCGGCaGCGCGGcCGCGCUCGgCa- -3'
miRNA:   3'- -CCGCCGcCGUGCUaGCGCGAGUgGcu -5'
26021 5' -60.4 NC_005342.2 + 9944 0.77 0.084069
Target:  5'- cGCcGCGuGCACGGUCGCGCgugCAUCGAu -3'
miRNA:   3'- cCGcCGC-CGUGCUAGCGCGa--GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 17082 0.76 0.091335
Target:  5'- gGGCGGCgacgccaaggcaGGCgGCGA-CGCGUUCGCCGGg -3'
miRNA:   3'- -CCGCCG------------CCG-UGCUaGCGCGAGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 47521 0.75 0.101955
Target:  5'- gGGCGGCGGCACaaacgccgugaaGAUUGCGUUCcgcacuGCCGc -3'
miRNA:   3'- -CCGCCGCCGUG------------CUAGCGCGAG------UGGCu -5'
26021 5' -60.4 NC_005342.2 + 44772 0.75 0.107692
Target:  5'- gGGCgGGCGGCGCGccgggcCG-GCUCACCGGc -3'
miRNA:   3'- -CCG-CCGCCGUGCua----GCgCGAGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 25124 0.74 0.126766
Target:  5'- cGGCGGCGcGCACGuUCGCGgcCUgcccgauacCACCGAu -3'
miRNA:   3'- -CCGCCGC-CGUGCuAGCGC--GA---------GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 22972 0.74 0.137438
Target:  5'- gGGCGGCGcGgACGcagacGUCGCGCUCGCg-- -3'
miRNA:   3'- -CCGCCGC-CgUGC-----UAGCGCGAGUGgcu -5'
26021 5' -60.4 NC_005342.2 + 19624 0.74 0.137438
Target:  5'- cGCGGCGaGCGCGGcCGaCGCUgGCCGu -3'
miRNA:   3'- cCGCCGC-CGUGCUaGC-GCGAgUGGCu -5'
26021 5' -60.4 NC_005342.2 + 39281 0.74 0.137438
Target:  5'- aGCGGCGuCACGGUCGgcaCGUUCGCCGu -3'
miRNA:   3'- cCGCCGCcGUGCUAGC---GCGAGUGGCu -5'
26021 5' -60.4 NC_005342.2 + 10620 0.73 0.145004
Target:  5'- uGGCGGCGaagaaaggugacGuCACGGUCGCGCcgGCCGGu -3'
miRNA:   3'- -CCGCCGC------------C-GUGCUAGCGCGagUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 38983 0.73 0.145004
Target:  5'- aGGCGcacGCGcGCGCGAUCGCagguuggcuGCUCACCc- -3'
miRNA:   3'- -CCGC---CGC-CGUGCUAGCG---------CGAGUGGcu -5'
26021 5' -60.4 NC_005342.2 + 47844 0.73 0.148929
Target:  5'- aGGCgcaGGCGGCAacCGggCGCGCgcaccgCGCCGGc -3'
miRNA:   3'- -CCG---CCGCCGU--GCuaGCGCGa-----GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 8965 0.73 0.148929
Target:  5'- cGCGGCGGCGacCGAcgCGCGUUCGCgGc -3'
miRNA:   3'- cCGCCGCCGU--GCUa-GCGCGAGUGgCu -5'
26021 5' -60.4 NC_005342.2 + 15490 0.73 0.148929
Target:  5'- uGGcCGGCGGCAgCGAccugCGCgugacguucuGCUCGCCGGc -3'
miRNA:   3'- -CC-GCCGCCGU-GCUa---GCG----------CGAGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 665 0.73 0.148929
Target:  5'- -uCGGUGaGCGCGAUCGUGC-CGCCGc -3'
miRNA:   3'- ccGCCGC-CGUGCUAGCGCGaGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.