miRNA display CGI


Results 1 - 20 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26021 5' -60.4 NC_005342.2 + 400 0.69 0.304162
Target:  5'- aGGCGGCGcgcuGCACGAUCa-GC-CugCGAu -3'
miRNA:   3'- -CCGCCGC----CGUGCUAGcgCGaGugGCU- -5'
26021 5' -60.4 NC_005342.2 + 665 0.73 0.148929
Target:  5'- -uCGGUGaGCGCGAUCGUGC-CGCCGc -3'
miRNA:   3'- ccGCCGC-CGUGCUAGCGCGaGUGGCu -5'
26021 5' -60.4 NC_005342.2 + 1346 0.71 0.222052
Target:  5'- cGGCGGCGGCcuugaacgaacgcAUGAagcCGCGCUUguacucauaccgcuuGCCGAc -3'
miRNA:   3'- -CCGCCGCCG-------------UGCUa--GCGCGAG---------------UGGCU- -5'
26021 5' -60.4 NC_005342.2 + 2601 0.71 0.20937
Target:  5'- aGGCcGaCcGCGCGGuucaUCGCGCUCGCCGGc -3'
miRNA:   3'- -CCGcC-GcCGUGCU----AGCGCGAGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 2671 0.68 0.319038
Target:  5'- cGGCGGCGGC-CGAcaggcCGaGCUCGUCGGc -3'
miRNA:   3'- -CCGCCGCCGuGCUa----GCgCGAGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 2977 0.68 0.319038
Target:  5'- cGCGaGCcaaGGCGCcAUCGCGCUUcgauGCCGGa -3'
miRNA:   3'- cCGC-CG---CCGUGcUAGCGCGAG----UGGCU- -5'
26021 5' -60.4 NC_005342.2 + 3184 0.67 0.366896
Target:  5'- cGCGGCcGCGCGGUguucagcgucugCGCGC-CGCCa- -3'
miRNA:   3'- cCGCCGcCGUGCUA------------GCGCGaGUGGcu -5'
26021 5' -60.4 NC_005342.2 + 3285 0.71 0.217013
Target:  5'- cGCGGCGGCGCGcgguugaauuaaacuAUCGC-UUCGCgCGAu -3'
miRNA:   3'- cCGCCGCCGUGC---------------UAGCGcGAGUG-GCU- -5'
26021 5' -60.4 NC_005342.2 + 3401 0.67 0.401438
Target:  5'- aGCuGCGGCGCGGUCGCcacCUgGuuGAc -3'
miRNA:   3'- cCGcCGCCGUGCUAGCGc--GAgUggCU- -5'
26021 5' -60.4 NC_005342.2 + 3639 0.69 0.282856
Target:  5'- cGGCaGCGGCACGGU-GCuCUCccacacGCCGAc -3'
miRNA:   3'- -CCGcCGCCGUGCUAgCGcGAG------UGGCU- -5'
26021 5' -60.4 NC_005342.2 + 4644 0.67 0.375337
Target:  5'- cGGCGcGCGGgucuuucuuCAgGAUCGUGC-CAUCGGc -3'
miRNA:   3'- -CCGC-CGCC---------GUgCUAGCGCGaGUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 4788 0.67 0.374487
Target:  5'- uGCGGCGcgcaagcGCGCGAUgCGCGCguccgUCAgcCCGAc -3'
miRNA:   3'- cCGCCGC-------CGUGCUA-GCGCG-----AGU--GGCU- -5'
26021 5' -60.4 NC_005342.2 + 5018 0.66 0.419468
Target:  5'- aGGCGGcCGGCuguuggcCGAcgUCgGCGCggCGCUGAa -3'
miRNA:   3'- -CCGCC-GCCGu------GCU--AG-CGCGa-GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 6832 0.67 0.375337
Target:  5'- cGGCGGCuGCGCacugcAUUGCGCagcCAUCGAg -3'
miRNA:   3'- -CCGCCGcCGUGc----UAGCGCGa--GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 7186 0.72 0.183466
Target:  5'- cGGauuGGCGGCGCGAaacgugucgacgaUCGUGCgCGCCGu -3'
miRNA:   3'- -CCg--CCGCCGUGCU-------------AGCGCGaGUGGCu -5'
26021 5' -60.4 NC_005342.2 + 7546 0.68 0.342364
Target:  5'- cGCGGCgaucgGGUugguguucuuuGCGGUCGCGagugCGCCGAa -3'
miRNA:   3'- cCGCCG-----CCG-----------UGCUAGCGCga--GUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 7821 0.67 0.366896
Target:  5'- cGCGGCcuGCGcCGGccauuuccagcUCGCGCUCGCCc- -3'
miRNA:   3'- cCGCCGc-CGU-GCU-----------AGCGCGAGUGGcu -5'
26021 5' -60.4 NC_005342.2 + 8278 0.69 0.276022
Target:  5'- aGGCGGCGcGCGgGGcUCGCGCccCGCUa- -3'
miRNA:   3'- -CCGCCGC-CGUgCU-AGCGCGa-GUGGcu -5'
26021 5' -60.4 NC_005342.2 + 8524 0.68 0.334454
Target:  5'- cGGCauaccCGGCugGAUCGUGUU-GCCGAa -3'
miRNA:   3'- -CCGcc---GCCGugCUAGCGCGAgUGGCU- -5'
26021 5' -60.4 NC_005342.2 + 8846 0.69 0.304162
Target:  5'- cGGCuGCGGCGCGGUUaGCcGCgCACCu- -3'
miRNA:   3'- -CCGcCGCCGUGCUAG-CG-CGaGUGGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.