miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26022 3' -50.3 NC_005342.2 + 47025 1.09 0.002371
Target:  5'- cUGCCGGCAUUGCAUUCCAUGCAAACGc -3'
miRNA:   3'- -ACGGCCGUAACGUAAGGUACGUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 16918 0.85 0.104516
Target:  5'- gGCCGGCAUUGCGggcgCCGUGCucGGCGu -3'
miRNA:   3'- aCGGCCGUAACGUaa--GGUACGu-UUGC- -5'
26022 3' -50.3 NC_005342.2 + 28629 0.75 0.387699
Target:  5'- gGCCGGCGcguacUUGCcgUCgGUGCGcAGCGg -3'
miRNA:   3'- aCGGCCGU-----AACGuaAGgUACGU-UUGC- -5'
26022 3' -50.3 NC_005342.2 + 10650 0.74 0.458029
Target:  5'- cGCCGGCcggUGCAcgCUAUGCAcuCGg -3'
miRNA:   3'- aCGGCCGua-ACGUaaGGUACGUuuGC- -5'
26022 3' -50.3 NC_005342.2 + 32790 0.74 0.468628
Target:  5'- cUGCCGGCcgUGCGgau--UGCGAACGc -3'
miRNA:   3'- -ACGGCCGuaACGUaagguACGUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 5279 0.73 0.490193
Target:  5'- cGCCGGCgagggugcggGUUGCAgcgcaUCCcgGCGAGCc -3'
miRNA:   3'- aCGGCCG----------UAACGUa----AGGuaCGUUUGc -5'
26022 3' -50.3 NC_005342.2 + 46980 0.73 0.512209
Target:  5'- cGCaGGCAUUGCucgCCGUGCAcaAAUGg -3'
miRNA:   3'- aCGgCCGUAACGuaaGGUACGU--UUGC- -5'
26022 3' -50.3 NC_005342.2 + 748 0.73 0.534622
Target:  5'- cGCCGGCgcGUUGCuagUCgAUGCGucgAACGg -3'
miRNA:   3'- aCGGCCG--UAACGua-AGgUACGU---UUGC- -5'
26022 3' -50.3 NC_005342.2 + 43385 0.72 0.557371
Target:  5'- cUGCCGGCGcgGCcgUUCAUGgaaaAGACGa -3'
miRNA:   3'- -ACGGCCGUaaCGuaAGGUACg---UUUGC- -5'
26022 3' -50.3 NC_005342.2 + 46040 0.72 0.591975
Target:  5'- gGCCGGUGUcgccggUGCGggCCAacuagUGCAGACGc -3'
miRNA:   3'- aCGGCCGUA------ACGUaaGGU-----ACGUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 44993 0.72 0.591975
Target:  5'- cGCCGGCGagcgucuacgGCAUUCCGuUGaCGGGCGu -3'
miRNA:   3'- aCGGCCGUaa--------CGUAAGGU-AC-GUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 18171 0.71 0.65026
Target:  5'- uUGCCGGCGUgccgggugaUGCGcucgUCGUGCGcGCGg -3'
miRNA:   3'- -ACGGCCGUA---------ACGUaa--GGUACGUuUGC- -5'
26022 3' -50.3 NC_005342.2 + 35202 0.71 0.65026
Target:  5'- gGCCGGUga-GCGUgCCGccUGCGAGCGg -3'
miRNA:   3'- aCGGCCGuaaCGUAaGGU--ACGUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 20319 0.71 0.65026
Target:  5'- uUGCCaGGC-UUGCcggCCGUGCcGACGg -3'
miRNA:   3'- -ACGG-CCGuAACGuaaGGUACGuUUGC- -5'
26022 3' -50.3 NC_005342.2 + 3824 0.7 0.708059
Target:  5'- cGCCGGCAa-GCGaaCCcgGCAAGCc -3'
miRNA:   3'- aCGGCCGUaaCGUaaGGuaCGUUUGc -5'
26022 3' -50.3 NC_005342.2 + 15180 0.69 0.730686
Target:  5'- gGCCGGCA--GCAggCCGguCAGACGg -3'
miRNA:   3'- aCGGCCGUaaCGUaaGGUacGUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 21471 0.69 0.752869
Target:  5'- aUGCCGGCcgAUUGC---CUAUGCGAcucGCGa -3'
miRNA:   3'- -ACGGCCG--UAACGuaaGGUACGUU---UGC- -5'
26022 3' -50.3 NC_005342.2 + 12476 0.69 0.752869
Target:  5'- uUGCCGGCAUacggGCcgUCCG-GCu--CGg -3'
miRNA:   3'- -ACGGCCGUAa---CGuaAGGUaCGuuuGC- -5'
26022 3' -50.3 NC_005342.2 + 18382 0.69 0.76376
Target:  5'- cGCCGGCAUcaugcucgUGCcgUCCGaaGCGcAACGc -3'
miRNA:   3'- aCGGCCGUA--------ACGuaAGGUa-CGU-UUGC- -5'
26022 3' -50.3 NC_005342.2 + 18556 0.69 0.764841
Target:  5'- aGCCGGCGcgGCGgcgaauccgaacccgUUCGUGCAacaAACGa -3'
miRNA:   3'- aCGGCCGUaaCGUa--------------AGGUACGU---UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.