Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26022 | 3' | -50.3 | NC_005342.2 | + | 748 | 0.73 | 0.534622 |
Target: 5'- cGCCGGCgcGUUGCuagUCgAUGCGucgAACGg -3' miRNA: 3'- aCGGCCG--UAACGua-AGgUACGU---UUGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 889 | 0.66 | 0.901974 |
Target: 5'- gGUCGGCAUUGCGcccUCGUaGCGuGCGc -3' miRNA: 3'- aCGGCCGUAACGUaa-GGUA-CGUuUGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 3824 | 0.7 | 0.708059 |
Target: 5'- cGCCGGCAa-GCGaaCCcgGCAAGCc -3' miRNA: 3'- aCGGCCGUaaCGUaaGGuaCGUUUGc -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 5179 | 0.66 | 0.909047 |
Target: 5'- gGCgCGGCGUcgGCA--CCGUcGCAAACu -3' miRNA: 3'- aCG-GCCGUAa-CGUaaGGUA-CGUUUGc -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 5279 | 0.73 | 0.490193 |
Target: 5'- cGCCGGCgagggugcggGUUGCAgcgcaUCCcgGCGAGCc -3' miRNA: 3'- aCGGCCG----------UAACGUa----AGGuaCGUUUGc -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 5365 | 0.67 | 0.862175 |
Target: 5'- aGCCGGCGUUgaccuguucGCGUUCUucUGCcaucGCGg -3' miRNA: 3'- aCGGCCGUAA---------CGUAAGGu-ACGuu--UGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 7546 | 0.68 | 0.805668 |
Target: 5'- cGUCGGCg--GCAgacCCAUGCGcagGACGu -3' miRNA: 3'- aCGGCCGuaaCGUaa-GGUACGU---UUGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 9576 | 0.67 | 0.852479 |
Target: 5'- aGCCGGCGcgGCAUcggCCGguugcgcaccggcUGCcGGCGg -3' miRNA: 3'- aCGGCCGUaaCGUAa--GGU-------------ACGuUUGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 10650 | 0.74 | 0.458029 |
Target: 5'- cGCCGGCcggUGCAcgCUAUGCAcuCGg -3' miRNA: 3'- aCGGCCGua-ACGUaaGGUACGUuuGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 11212 | 0.66 | 0.886925 |
Target: 5'- uUGCCGGCGcucgagUGCug-CCAgacggcccaaUGCAGGCc -3' miRNA: 3'- -ACGGCCGUa-----ACGuaaGGU----------ACGUUUGc -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 11695 | 0.66 | 0.909047 |
Target: 5'- gUGCUGGCGUccUGCGcgaugUCCG-GCAGcCGa -3' miRNA: 3'- -ACGGCCGUA--ACGUa----AGGUaCGUUuGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 12476 | 0.69 | 0.752869 |
Target: 5'- uUGCCGGCAUacggGCcgUCCG-GCu--CGg -3' miRNA: 3'- -ACGGCCGUAa---CGuaAGGUaCGuuuGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 15180 | 0.69 | 0.730686 |
Target: 5'- gGCCGGCA--GCAggCCGguCAGACGg -3' miRNA: 3'- aCGGCCGUaaCGUaaGGUacGUUUGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 16918 | 0.85 | 0.104516 |
Target: 5'- gGCCGGCAUUGCGggcgCCGUGCucGGCGu -3' miRNA: 3'- aCGGCCGUAACGUaa--GGUACGu-UUGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 18171 | 0.71 | 0.65026 |
Target: 5'- uUGCCGGCGUgccgggugaUGCGcucgUCGUGCGcGCGg -3' miRNA: 3'- -ACGGCCGUA---------ACGUaa--GGUACGUuUGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 18382 | 0.69 | 0.76376 |
Target: 5'- cGCCGGCAUcaugcucgUGCcgUCCGaaGCGcAACGc -3' miRNA: 3'- aCGGCCGUA--------ACGuaAGGUa-CGU-UUGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 18556 | 0.69 | 0.764841 |
Target: 5'- aGCCGGCGcgGCGgcgaauccgaacccgUUCGUGCAacaAACGa -3' miRNA: 3'- aCGGCCGUaaCGUa--------------AGGUACGU---UUGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 18837 | 0.68 | 0.774498 |
Target: 5'- cGCgCGGCAguacGCAguugCCGUGCGcAACGc -3' miRNA: 3'- aCG-GCCGUaa--CGUaa--GGUACGU-UUGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 20319 | 0.71 | 0.65026 |
Target: 5'- uUGCCaGGC-UUGCcggCCGUGCcGACGg -3' miRNA: 3'- -ACGG-CCGuAACGuaaGGUACGuUUGC- -5' |
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26022 | 3' | -50.3 | NC_005342.2 | + | 21471 | 0.69 | 0.752869 |
Target: 5'- aUGCCGGCcgAUUGC---CUAUGCGAcucGCGa -3' miRNA: 3'- -ACGGCCG--UAACGuaaGGUACGUU---UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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