miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26023 5' -58.2 NC_005342.2 + 22022 0.74 0.187497
Target:  5'- cGC-CGGCAUCGACgcCGCGCGCa--- -3'
miRNA:   3'- -CGuGCCGUGGCUGaaGCGCGCGcuga -5'
26023 5' -58.2 NC_005342.2 + 30207 0.73 0.192522
Target:  5'- cGCGCGGCGCCGGCUgaaUGCuuGCGCa--- -3'
miRNA:   3'- -CGUGCCGUGGCUGAa--GCG--CGCGcuga -5'
26023 5' -58.2 NC_005342.2 + 11719 0.73 0.197146
Target:  5'- gGCAgccgacCGGCACCGACgUUCaccuugaGUGCGCGACc -3'
miRNA:   3'- -CGU------GCCGUGGCUG-AAG-------CGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 45146 0.73 0.208313
Target:  5'- -gGCGGCGCCGACggCGCauuCGCGAg- -3'
miRNA:   3'- cgUGCCGUGGCUGaaGCGc--GCGCUga -5'
26023 5' -58.2 NC_005342.2 + 18322 0.72 0.225208
Target:  5'- cGCACGGCaaagcgGCCGAggaCgcCGCGCGUGGCc -3'
miRNA:   3'- -CGUGCCG------UGGCU---GaaGCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 20216 0.72 0.225208
Target:  5'- gGCuCGGCgGCCGACcagaUUCGCGCcGCGAUc -3'
miRNA:   3'- -CGuGCCG-UGGCUG----AAGCGCG-CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 32314 0.72 0.231093
Target:  5'- cGUuuGcGCGCCGcguaUUCGCGCGCGGCUu -3'
miRNA:   3'- -CGugC-CGUGGCug--AAGCGCGCGCUGA- -5'
26023 5' -58.2 NC_005342.2 + 1293 0.72 0.231093
Target:  5'- gGCGC-GCGCCGcCUUggcUGCGCGCGAUg -3'
miRNA:   3'- -CGUGcCGUGGCuGAA---GCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 3355 0.72 0.231093
Target:  5'- aGCugGcGCAgCGAgUcgggcagguugUCGCGCGCGGCg -3'
miRNA:   3'- -CGugC-CGUgGCUgA-----------AGCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 44749 0.72 0.237108
Target:  5'- cGCGUGGCGCUGGCg--GCGCGCaGACg -3'
miRNA:   3'- -CGUGCCGUGGCUGaagCGCGCG-CUGa -5'
26023 5' -58.2 NC_005342.2 + 11042 0.72 0.237108
Target:  5'- gGCGgaacuCGGCACCGGCgcgcgUCGUGaGCGGCg -3'
miRNA:   3'- -CGU-----GCCGUGGCUGa----AGCGCgCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 25111 0.72 0.243253
Target:  5'- gGCACGGCGagcaCGGCggCGCGCacguucGCGGCc -3'
miRNA:   3'- -CGUGCCGUg---GCUGaaGCGCG------CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 30831 0.72 0.243253
Target:  5'- gGCGCGaGCugCuGC-UCGCGCGCGAg- -3'
miRNA:   3'- -CGUGC-CGugGcUGaAGCGCGCGCUga -5'
26023 5' -58.2 NC_005342.2 + 5043 0.72 0.249529
Target:  5'- gGCGCGGCGCUGAacagcgUCagcagGUGUGCGACg -3'
miRNA:   3'- -CGUGCCGUGGCUga----AG-----CGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 15477 0.72 0.249529
Target:  5'- cGCgGCGGuCACCGGCggCGCgucaaGCGCGAUg -3'
miRNA:   3'- -CG-UGCC-GUGGCUGaaGCG-----CGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 11587 0.71 0.255939
Target:  5'- -aACGcGCcgGCCGucACUUCGCGCGCGAa- -3'
miRNA:   3'- cgUGC-CG--UGGC--UGAAGCGCGCGCUga -5'
26023 5' -58.2 NC_005342.2 + 11962 0.71 0.255939
Target:  5'- cGCAUGGCGCagGAC-UCGCGUGUcGCUg -3'
miRNA:   3'- -CGUGCCGUGg-CUGaAGCGCGCGcUGA- -5'
26023 5' -58.2 NC_005342.2 + 37766 0.71 0.261164
Target:  5'- cGCGCaGCuuugauGCCGACggccgcaugcgCGUGCGCGACUg -3'
miRNA:   3'- -CGUGcCG------UGGCUGaa---------GCGCGCGCUGA- -5'
26023 5' -58.2 NC_005342.2 + 42777 0.71 0.262483
Target:  5'- uGCgACGGUGCCGACgcCGCGCcugcagGCGAUg -3'
miRNA:   3'- -CG-UGCCGUGGCUGaaGCGCG------CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 27218 0.71 0.262483
Target:  5'- cGCGuCGGCGauguCCGGCagCGCGCGCGcCg -3'
miRNA:   3'- -CGU-GCCGU----GGCUGaaGCGCGCGCuGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.