miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26023 5' -58.2 NC_005342.2 + 7224 0.66 0.542126
Target:  5'- uCGCGGCAacgcCCGACgauuagaCGCcgaucaucuGCGCGACg -3'
miRNA:   3'- cGUGCCGU----GGCUGaa-----GCG---------CGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 7374 0.68 0.394838
Target:  5'- cGCA-GGuCGCCGugUccuugccuUCGaCGCGCGGCg -3'
miRNA:   3'- -CGUgCC-GUGGCugA--------AGC-GCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 8422 0.67 0.490447
Target:  5'- uCACGGCAgCCGGgUaUGCGCGUucgGACg -3'
miRNA:   3'- cGUGCCGU-GGCUgAaGCGCGCG---CUGa -5'
26023 5' -58.2 NC_005342.2 + 8624 0.74 0.177791
Target:  5'- gGCGCGGCGcCCGGCUU-GCuCGUGACg -3'
miRNA:   3'- -CGUGCCGU-GGCUGAAgCGcGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 8917 0.69 0.368587
Target:  5'- cGCGcCGGCGCUGucCaUCGCGUGCGcggGCUg -3'
miRNA:   3'- -CGU-GCCGUGGCu-GaAGCGCGCGC---UGA- -5'
26023 5' -58.2 NC_005342.2 + 8963 0.75 0.159712
Target:  5'- uGCGCGGCGgCGACcgacgCGCGUucGCGGCUu -3'
miRNA:   3'- -CGUGCCGUgGCUGaa---GCGCG--CGCUGA- -5'
26023 5' -58.2 NC_005342.2 + 9170 0.74 0.168535
Target:  5'- cGCACGGCGCaCGAg-UCGCGCGU-ACUc -3'
miRNA:   3'- -CGUGCCGUG-GCUgaAGCGCGCGcUGA- -5'
26023 5' -58.2 NC_005342.2 + 9182 0.67 0.469426
Target:  5'- uCGCGGUgcgcACCGACUUCGCauccaucGCGCcGAa- -3'
miRNA:   3'- cGUGCCG----UGGCUGAAGCG-------CGCG-CUga -5'
26023 5' -58.2 NC_005342.2 + 9235 0.67 0.480381
Target:  5'- cGUGCGGCAuaGcCUUCGUGCGgauuCGGCUu -3'
miRNA:   3'- -CGUGCCGUggCuGAAGCGCGC----GCUGA- -5'
26023 5' -58.2 NC_005342.2 + 9310 0.66 0.52017
Target:  5'- --uCGGCGCuuuCGugUUCgucgucgGCGCGCGGCg -3'
miRNA:   3'- cguGCCGUG---GCugAAG-------CGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 9546 0.66 0.531629
Target:  5'- -gGCGGCugCGGgaaUUUCaGCGCgGCGGCc -3'
miRNA:   3'- cgUGCCGugGCU---GAAG-CGCG-CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 9580 0.76 0.118268
Target:  5'- gGCGCGGCAUCGGCcggUUGCGCacCGGCUg -3'
miRNA:   3'- -CGUGCCGUGGCUGa--AGCGCGc-GCUGA- -5'
26023 5' -58.2 NC_005342.2 + 9974 0.66 0.521208
Target:  5'- uGCGCGGUugUcGGCcgUC-UGCGCGACg -3'
miRNA:   3'- -CGUGCCGugG-CUGa-AGcGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 10107 0.68 0.422267
Target:  5'- aGguCGGCauaGCCGACcacUUCGCGacCGCGAUa -3'
miRNA:   3'- -CguGCCG---UGGCUG---AAGCGC--GCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 10589 0.68 0.401135
Target:  5'- gGCGCGcGCucgaugaaugucugAuCCGGCgggaugUCGCGCGUGACa -3'
miRNA:   3'- -CGUGC-CG--------------U-GGCUGa-----AGCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 10844 0.68 0.441177
Target:  5'- cCGCGaGCGCCGACguaggaCGaugaggacggcCGCGCGACg -3'
miRNA:   3'- cGUGC-CGUGGCUGaa----GC-----------GCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 11042 0.72 0.237108
Target:  5'- gGCGgaacuCGGCACCGGCgcgcgUCGUGaGCGGCg -3'
miRNA:   3'- -CGU-----GCCGUGGCUGa----AGCGCgCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 11052 0.69 0.343559
Target:  5'- cGUGCGGCccauuCCGGgaaugaUCGUGCGCGACg -3'
miRNA:   3'- -CGUGCCGu----GGCUga----AGCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 11183 0.67 0.480381
Target:  5'- cCGCGcGCACgUGA-UUCGgGCGCGGCUc -3'
miRNA:   3'- cGUGC-CGUG-GCUgAAGCgCGCGCUGA- -5'
26023 5' -58.2 NC_005342.2 + 11266 0.71 0.282932
Target:  5'- cGCGCGcuguugaacuGCGCCGucgccuuguugcACUggUCGCGCGCGAUg -3'
miRNA:   3'- -CGUGC----------CGUGGC------------UGA--AGCGCGCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.