miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26024 3' -50.5 NC_005342.2 + 29635 0.68 0.825219
Target:  5'- uCCU-CGGC-CGCuuUGCCGUGCGccucgaaaaugcGCGAGa -3'
miRNA:   3'- -GGAuGUUGaGCG--ACGGCAUGU------------UGCUC- -5'
26024 3' -50.5 NC_005342.2 + 30739 0.66 0.907307
Target:  5'- gCUGCAGCU-GCUGCagcauGUGCGGCa-- -3'
miRNA:   3'- gGAUGUUGAgCGACGg----CAUGUUGcuc -5'
26024 3' -50.5 NC_005342.2 + 31054 0.67 0.893052
Target:  5'- gCCggcCAGCUucaucagacCGCUGCCGaGCGACGcAGc -3'
miRNA:   3'- -GGau-GUUGA---------GCGACGGCaUGUUGC-UC- -5'
26024 3' -50.5 NC_005342.2 + 31481 0.68 0.843679
Target:  5'- cCCUuguAC-GCUCGCgUGUCGUGCGACa-- -3'
miRNA:   3'- -GGA---UGuUGAGCG-ACGGCAUGUUGcuc -5'
26024 3' -50.5 NC_005342.2 + 33163 0.72 0.631402
Target:  5'- gUCUGCGaaugaccuGCUCGC-GCgCGUGCGGCGAa -3'
miRNA:   3'- -GGAUGU--------UGAGCGaCG-GCAUGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 34516 0.67 0.861183
Target:  5'- gCCUGCGcAUUCGCgacGCgGUGCGcACGAc -3'
miRNA:   3'- -GGAUGU-UGAGCGa--CGgCAUGU-UGCUc -5'
26024 3' -50.5 NC_005342.2 + 34867 0.78 0.325385
Target:  5'- --cGCAGCUCGCgaUGCCGUACAuCGAc -3'
miRNA:   3'- ggaUGUUGAGCG--ACGGCAUGUuGCUc -5'
26024 3' -50.5 NC_005342.2 + 35561 0.66 0.913998
Target:  5'- aCCUACGuccagCGCUugGCCGaagGCGGCGAc -3'
miRNA:   3'- -GGAUGUuga--GCGA--CGGCa--UGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 37417 0.67 0.864563
Target:  5'- gCCUGCGAUgcgcccgauaaacgCGCgaugGCCGUcuguuGCGACGAu -3'
miRNA:   3'- -GGAUGUUGa-------------GCGa---CGGCA-----UGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 38247 0.7 0.718399
Target:  5'- -gUGCGACgCGUUGCCGUccgacgcgcucacgGCAACGAc -3'
miRNA:   3'- ggAUGUUGaGCGACGGCA--------------UGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 38506 0.66 0.926494
Target:  5'- --aGCAGCUCgGCgGCgGUGCGGCGc- -3'
miRNA:   3'- ggaUGUUGAG-CGaCGgCAUGUUGCuc -5'
26024 3' -50.5 NC_005342.2 + 38555 0.67 0.885496
Target:  5'- aCCggACGGCgugCGCaGCCcgcaggGCAGCGAGg -3'
miRNA:   3'- -GGa-UGUUGa--GCGaCGGca----UGUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 38789 0.69 0.795922
Target:  5'- --cGCGACUCGUgcGCCGUGCGuCGGc -3'
miRNA:   3'- ggaUGUUGAGCGa-CGGCAUGUuGCUc -5'
26024 3' -50.5 NC_005342.2 + 41323 0.67 0.893052
Target:  5'- gCCUGCucgagcgcgccgAGCgCGCUGCCGagcGCGAuCGAGu -3'
miRNA:   3'- -GGAUG------------UUGaGCGACGGCa--UGUU-GCUC- -5'
26024 3' -50.5 NC_005342.2 + 41371 0.72 0.597225
Target:  5'- aCCUGCGACUgcggCGCUgggcggcgcGCCGUgGCGGCGAu -3'
miRNA:   3'- -GGAUGUUGA----GCGA---------CGGCA-UGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 41464 0.68 0.852555
Target:  5'- --gGCGACUCGCgcGCCGggcuaugggucUGCAcgaGCGAGg -3'
miRNA:   3'- ggaUGUUGAGCGa-CGGC-----------AUGU---UGCUC- -5'
26024 3' -50.5 NC_005342.2 + 41926 0.69 0.785774
Target:  5'- gCCUGCGGCUCGaCUucGaCCGcACGACGGc -3'
miRNA:   3'- -GGAUGUUGAGC-GA--C-GGCaUGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 44065 0.68 0.852555
Target:  5'- gCCUGCcGC-CGCUGCCGccuggcgcUACcACGAc -3'
miRNA:   3'- -GGAUGuUGaGCGACGGC--------AUGuUGCUc -5'
26024 3' -50.5 NC_005342.2 + 44122 0.67 0.885496
Target:  5'- gCUACAACggcuugccggguUCGCuUGCCG-GCGcguGCGAGg -3'
miRNA:   3'- gGAUGUUG------------AGCG-ACGGCaUGU---UGCUC- -5'
26024 3' -50.5 NC_005342.2 + 44599 0.68 0.852555
Target:  5'- aCCUGCccGACUCGCUGCgCcaGCugauCGAGc -3'
miRNA:   3'- -GGAUG--UUGAGCGACG-GcaUGuu--GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.