Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26024 | 3' | -50.5 | NC_005342.2 | + | 1204 | 0.66 | 0.920394 |
Target: 5'- uCCUGCAGUUCGCcgaUGCUGUugAAuuCGAa -3' miRNA: 3'- -GGAUGUUGAGCG---ACGGCAugUU--GCUc -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 2166 | 0.7 | 0.743586 |
Target: 5'- cCCgACAGCUUGCcGUCGUAC-GCGAu -3' miRNA: 3'- -GGaUGUUGAGCGaCGGCAUGuUGCUc -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 2375 | 0.66 | 0.926494 |
Target: 5'- gCCgGCGG-UCGCcuggucGCCGUACAGCGGc -3' miRNA: 3'- -GGaUGUUgAGCGa-----CGGCAUGUUGCUc -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 2655 | 0.74 | 0.508138 |
Target: 5'- gCCUGCAGCgUCGC-GCCG-GCGGCGGc -3' miRNA: 3'- -GGAUGUUG-AGCGaCGGCaUGUUGCUc -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 3343 | 0.66 | 0.900324 |
Target: 5'- --cGCAGCUCGaucaGCUGgcGCAGCGAGu -3' miRNA: 3'- ggaUGUUGAGCga--CGGCa-UGUUGCUC- -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 7282 | 0.67 | 0.877662 |
Target: 5'- cCCgaaACGuUUCGcCUGCCGUGCGAcCGAc -3' miRNA: 3'- -GGa--UGUuGAGC-GACGGCAUGUU-GCUc -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 11975 | 0.68 | 0.825219 |
Target: 5'- aCUcGCGugUCGCUGCauguCGUGgcuCGGCGAGg -3' miRNA: 3'- gGA-UGUugAGCGACG----GCAU---GUUGCUC- -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 17135 | 0.66 | 0.900324 |
Target: 5'- --aGCAGCUCGC-GCCGcu-GACGGGc -3' miRNA: 3'- ggaUGUUGAGCGaCGGCaugUUGCUC- -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 17168 | 0.7 | 0.710629 |
Target: 5'- aCCUGCAggcGCUCGC-GUCGUuCGGCGuGa -3' miRNA: 3'- -GGAUGU---UGAGCGaCGGCAuGUUGCuC- -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 18515 | 0.66 | 0.907307 |
Target: 5'- gCUGCAGCggccuUCGCaGCCGgcgGCAAccCGGGu -3' miRNA: 3'- gGAUGUUG-----AGCGaCGGCa--UGUU--GCUC- -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 19736 | 0.72 | 0.619995 |
Target: 5'- --gACGGCgcCGCUGCCGU-CAACGAc -3' miRNA: 3'- ggaUGUUGa-GCGACGGCAuGUUGCUc -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 19926 | 0.68 | 0.825219 |
Target: 5'- --gACGACgagCGC-GCCGgGCGGCGAGc -3' miRNA: 3'- ggaUGUUGa--GCGaCGGCaUGUUGCUC- -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 20267 | 0.66 | 0.920394 |
Target: 5'- aCCUACGACgucUCGCUGCagcgcguucagGUGC-GCGAc -3' miRNA: 3'- -GGAUGUUG---AGCGACGg----------CAUGuUGCUc -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 20318 | 0.7 | 0.754347 |
Target: 5'- gUUGCcaGGCUUGCcgGCCGUGcCGACGGGu -3' miRNA: 3'- gGAUG--UUGAGCGa-CGGCAU-GUUGCUC- -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 24986 | 0.66 | 0.907307 |
Target: 5'- aCCggUACcGCgaCGCUGCCG-GCGGCGAa -3' miRNA: 3'- -GG--AUGuUGa-GCGACGGCaUGUUGCUc -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 27053 | 0.66 | 0.920394 |
Target: 5'- aCCU-CGACgggCGUUGCCGUAUGgauuucGCGGa -3' miRNA: 3'- -GGAuGUUGa--GCGACGGCAUGU------UGCUc -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 27665 | 0.7 | 0.754347 |
Target: 5'- aCCUGCGAgUCGC-GCaccugaacgCGcUGCAGCGAGa -3' miRNA: 3'- -GGAUGUUgAGCGaCG---------GC-AUGUUGCUC- -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 28734 | 0.66 | 0.925897 |
Target: 5'- cCCgUAUuGCUCGagcGCCGUGCGgaacgccGCGAGa -3' miRNA: 3'- -GG-AUGuUGAGCga-CGGCAUGU-------UGCUC- -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 29092 | 0.74 | 0.519011 |
Target: 5'- aCCUcgaGCGGCUCGUUGCCGgcgaagcagACGGCGuAGc -3' miRNA: 3'- -GGA---UGUUGAGCGACGGCa--------UGUUGC-UC- -5' |
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26024 | 3' | -50.5 | NC_005342.2 | + | 29456 | 0.68 | 0.815657 |
Target: 5'- gCUGCAGCgucCGUcggcgUGCCGgcaGCGGCGGGu -3' miRNA: 3'- gGAUGUUGa--GCG-----ACGGCa--UGUUGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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