miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26024 3' -50.5 NC_005342.2 + 2655 0.74 0.508138
Target:  5'- gCCUGCAGCgUCGC-GCCG-GCGGCGGc -3'
miRNA:   3'- -GGAUGUUG-AGCGaCGGCaUGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 44122 0.67 0.885496
Target:  5'- gCUACAACggcuugccggguUCGCuUGCCG-GCGcguGCGAGg -3'
miRNA:   3'- gGAUGUUG------------AGCG-ACGGCaUGU---UGCUC- -5'
26024 3' -50.5 NC_005342.2 + 18515 0.66 0.907307
Target:  5'- gCUGCAGCggccuUCGCaGCCGgcgGCAAccCGGGu -3'
miRNA:   3'- gGAUGUUG-----AGCGaCGGCa--UGUU--GCUC- -5'
26024 3' -50.5 NC_005342.2 + 2375 0.66 0.926494
Target:  5'- gCCgGCGG-UCGCcuggucGCCGUACAGCGGc -3'
miRNA:   3'- -GGaUGUUgAGCGa-----CGGCAUGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 2166 0.7 0.743586
Target:  5'- cCCgACAGCUUGCcGUCGUAC-GCGAu -3'
miRNA:   3'- -GGaUGUUGAGCGaCGGCAUGuUGCUc -5'
26024 3' -50.5 NC_005342.2 + 20318 0.7 0.754347
Target:  5'- gUUGCcaGGCUUGCcgGCCGUGcCGACGGGu -3'
miRNA:   3'- gGAUG--UUGAGCGa-CGGCAU-GUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 41926 0.69 0.785774
Target:  5'- gCCUGCGGCUCGaCUucGaCCGcACGACGGc -3'
miRNA:   3'- -GGAUGUUGAGC-GA--C-GGCaUGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 47541 0.69 0.785774
Target:  5'- aCCUGCAgaucGCagGCUGaUCGUGCAGCGc- -3'
miRNA:   3'- -GGAUGU----UGagCGAC-GGCAUGUUGCuc -5'
26024 3' -50.5 NC_005342.2 + 19926 0.68 0.825219
Target:  5'- --gACGACgagCGC-GCCGgGCGGCGAGc -3'
miRNA:   3'- ggaUGUUGa--GCGaCGGCaUGUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 46813 0.67 0.869555
Target:  5'- aCCUACucgcGCUCgaaauGCUGCCGcuCAGCGGu -3'
miRNA:   3'- -GGAUGu---UGAG-----CGACGGCauGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 31481 0.68 0.843679
Target:  5'- cCCUuguAC-GCUCGCgUGUCGUGCGACa-- -3'
miRNA:   3'- -GGA---UGuUGAGCG-ACGGCAUGUUGcuc -5'
26024 3' -50.5 NC_005342.2 + 45608 0.68 0.815657
Target:  5'- aUCUACGACgaggCGCUGCUcgagGUGCuugcCGAGc -3'
miRNA:   3'- -GGAUGUUGa---GCGACGG----CAUGuu--GCUC- -5'
26024 3' -50.5 NC_005342.2 + 29092 0.74 0.519011
Target:  5'- aCCUcgaGCGGCUCGUUGCCGgcgaagcagACGGCGuAGc -3'
miRNA:   3'- -GGA---UGUUGAGCGACGGCa--------UGUUGC-UC- -5'
26024 3' -50.5 NC_005342.2 + 41464 0.68 0.852555
Target:  5'- --gGCGACUCGCgcGCCGggcuaugggucUGCAcgaGCGAGg -3'
miRNA:   3'- ggaUGUUGAGCGa-CGGC-----------AUGU---UGCUC- -5'
26024 3' -50.5 NC_005342.2 + 19736 0.72 0.619995
Target:  5'- --gACGGCgcCGCUGCCGU-CAACGAc -3'
miRNA:   3'- ggaUGUUGa-GCGACGGCAuGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 38789 0.69 0.795922
Target:  5'- --cGCGACUCGUgcGCCGUGCGuCGGc -3'
miRNA:   3'- ggaUGUUGAGCGa-CGGCAUGUuGCUc -5'
26024 3' -50.5 NC_005342.2 + 44599 0.68 0.852555
Target:  5'- aCCUGCccGACUCGCUGCgCcaGCugauCGAGc -3'
miRNA:   3'- -GGAUG--UUGAGCGACG-GcaUGuu--GCUC- -5'
26024 3' -50.5 NC_005342.2 + 31054 0.67 0.893052
Target:  5'- gCCggcCAGCUucaucagacCGCUGCCGaGCGACGcAGc -3'
miRNA:   3'- -GGau-GUUGA---------GCGACGGCaUGUUGC-UC- -5'
26024 3' -50.5 NC_005342.2 + 38247 0.7 0.718399
Target:  5'- -gUGCGACgCGUUGCCGUccgacgcgcucacgGCAACGAc -3'
miRNA:   3'- ggAUGUUGaGCGACGGCA--------------UGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 27665 0.7 0.754347
Target:  5'- aCCUGCGAgUCGC-GCaccugaacgCGcUGCAGCGAGa -3'
miRNA:   3'- -GGAUGUUgAGCGaCG---------GC-AUGUUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.