miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26024 3' -50.5 NC_005342.2 + 45895 0.99 0.014592
Target:  5'- gCCUACAACUCGCU-CCGUACAACGAGg -3'
miRNA:   3'- -GGAUGUUGAGCGAcGGCAUGUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 34867 0.78 0.325385
Target:  5'- --cGCAGCUCGCgaUGCCGUACAuCGAc -3'
miRNA:   3'- ggaUGUUGAGCG--ACGGCAUGUuGCUc -5'
26024 3' -50.5 NC_005342.2 + 2655 0.74 0.508138
Target:  5'- gCCUGCAGCgUCGC-GCCG-GCGGCGGc -3'
miRNA:   3'- -GGAUGUUG-AGCGaCGGCaUGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 29092 0.74 0.519011
Target:  5'- aCCUcgaGCGGCUCGUUGCCGgcgaagcagACGGCGuAGc -3'
miRNA:   3'- -GGA---UGUUGAGCGACGGCa--------UGUUGC-UC- -5'
26024 3' -50.5 NC_005342.2 + 41371 0.72 0.597225
Target:  5'- aCCUGCGACUgcggCGCUgggcggcgcGCCGUgGCGGCGAu -3'
miRNA:   3'- -GGAUGUUGA----GCGA---------CGGCA-UGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 19736 0.72 0.619995
Target:  5'- --gACGGCgcCGCUGCCGU-CAACGAc -3'
miRNA:   3'- ggaUGUUGa-GCGACGGCAuGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 33163 0.72 0.631402
Target:  5'- gUCUGCGaaugaccuGCUCGC-GCgCGUGCGGCGAa -3'
miRNA:   3'- -GGAUGU--------UGAGCGaCG-GCAUGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 17168 0.7 0.710629
Target:  5'- aCCUGCAggcGCUCGC-GUCGUuCGGCGuGa -3'
miRNA:   3'- -GGAUGU---UGAGCGaCGGCAuGUUGCuC- -5'
26024 3' -50.5 NC_005342.2 + 38247 0.7 0.718399
Target:  5'- -gUGCGACgCGUUGCCGUccgacgcgcucacgGCAACGAc -3'
miRNA:   3'- ggAUGUUGaGCGACGGCA--------------UGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 2166 0.7 0.743586
Target:  5'- cCCgACAGCUUGCcGUCGUAC-GCGAu -3'
miRNA:   3'- -GGaUGUUGAGCGaCGGCAUGuUGCUc -5'
26024 3' -50.5 NC_005342.2 + 20318 0.7 0.754347
Target:  5'- gUUGCcaGGCUUGCcgGCCGUGcCGACGGGu -3'
miRNA:   3'- gGAUG--UUGAGCGa-CGGCAU-GUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 27665 0.7 0.754347
Target:  5'- aCCUGCGAgUCGC-GCaccugaacgCGcUGCAGCGAGa -3'
miRNA:   3'- -GGAUGUUgAGCGaCG---------GC-AUGUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 47541 0.69 0.785774
Target:  5'- aCCUGCAgaucGCagGCUGaUCGUGCAGCGc- -3'
miRNA:   3'- -GGAUGU----UGagCGAC-GGCAUGUUGCuc -5'
26024 3' -50.5 NC_005342.2 + 41926 0.69 0.785774
Target:  5'- gCCUGCGGCUCGaCUucGaCCGcACGACGGc -3'
miRNA:   3'- -GGAUGUUGAGC-GA--C-GGCaUGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 38789 0.69 0.795922
Target:  5'- --cGCGACUCGUgcGCCGUGCGuCGGc -3'
miRNA:   3'- ggaUGUUGAGCGa-CGGCAUGUuGCUc -5'
26024 3' -50.5 NC_005342.2 + 45608 0.68 0.815657
Target:  5'- aUCUACGACgaggCGCUGCUcgagGUGCuugcCGAGc -3'
miRNA:   3'- -GGAUGUUGa---GCGACGG----CAUGuu--GCUC- -5'
26024 3' -50.5 NC_005342.2 + 29456 0.68 0.815657
Target:  5'- gCUGCAGCgucCGUcggcgUGCCGgcaGCGGCGGGu -3'
miRNA:   3'- gGAUGUUGa--GCG-----ACGGCa--UGUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 29635 0.68 0.825219
Target:  5'- uCCU-CGGC-CGCuuUGCCGUGCGccucgaaaaugcGCGAGa -3'
miRNA:   3'- -GGAuGUUGaGCG--ACGGCAUGU------------UGCUC- -5'
26024 3' -50.5 NC_005342.2 + 11975 0.68 0.825219
Target:  5'- aCUcGCGugUCGCUGCauguCGUGgcuCGGCGAGg -3'
miRNA:   3'- gGA-UGUugAGCGACG----GCAU---GUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 19926 0.68 0.825219
Target:  5'- --gACGACgagCGC-GCCGgGCGGCGAGc -3'
miRNA:   3'- ggaUGUUGa--GCGaCGGCaUGUUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.