miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26025 3' -52.6 NC_005342.2 + 45514 1.09 0.001683
Target:  5'- aCGAACAACGCGGCUUCGUUUGGCGCGc -3'
miRNA:   3'- -GCUUGUUGCGCCGAAGCAAACCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 8894 0.84 0.091118
Target:  5'- uCGAugcGCGACGCGGCUUCGUUcgcgccGGCGCu -3'
miRNA:   3'- -GCU---UGUUGCGCCGAAGCAAa-----CCGCGc -5'
26025 3' -52.6 NC_005342.2 + 27445 0.79 0.185568
Target:  5'- gCGAACGGCGCGGCggCGgccGGCaGCGg -3'
miRNA:   3'- -GCUUGUUGCGCCGaaGCaaaCCG-CGC- -5'
26025 3' -52.6 NC_005342.2 + 16272 0.77 0.25043
Target:  5'- cCGAGCAGgGCGGCUUCGgcguguucaacaaGGUGCGu -3'
miRNA:   3'- -GCUUGUUgCGCCGAAGCaaa----------CCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 9375 0.76 0.277314
Target:  5'- gCGGACGG-GCGGCgUUCGUaUGGCGCc -3'
miRNA:   3'- -GCUUGUUgCGCCG-AAGCAaACCGCGc -5'
26025 3' -52.6 NC_005342.2 + 3022 0.73 0.411304
Target:  5'- cCGAcaagcACGugGCcgGGCUUCGU--GGCGCGg -3'
miRNA:   3'- -GCU-----UGUugCG--CCGAAGCAaaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 14813 0.73 0.430658
Target:  5'- cCGGACu-CGCGGCUaCGguucGGCGCGc -3'
miRNA:   3'- -GCUUGuuGCGCCGAaGCaaa-CCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 38503 0.72 0.51298
Target:  5'- uCGAGCAGCucgGCGGCggugCGgcgcccgcacUUGGCGCGc -3'
miRNA:   3'- -GCUUGUUG---CGCCGaa--GCa---------AACCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 14190 0.71 0.534592
Target:  5'- gCGAACAcggggaGUGGUauUUCGUUaGGCGCGa -3'
miRNA:   3'- -GCUUGUug----CGCCG--AAGCAAaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 728 0.71 0.545518
Target:  5'- uCGuuCAGCGCGGCagUCGccgccGGCGCGu -3'
miRNA:   3'- -GCuuGUUGCGCCGa-AGCaaa--CCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 30786 0.69 0.634777
Target:  5'- cCGAACGACGCGaGCgccugcagGUUcGGCGCc -3'
miRNA:   3'- -GCUUGUUGCGC-CGaag-----CAAaCCGCGc -5'
26025 3' -52.6 NC_005342.2 + 11947 0.69 0.634777
Target:  5'- uCGGGCGGCGCGuaU-CGcaUGGCGCa -3'
miRNA:   3'- -GCUUGUUGCGCcgAaGCaaACCGCGc -5'
26025 3' -52.6 NC_005342.2 + 46056 0.69 0.646027
Target:  5'- aCGAGCGggcgccguuauGCGCcGCUgCGgauUUGGCGCGg -3'
miRNA:   3'- -GCUUGU-----------UGCGcCGAaGCa--AACCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 39737 0.69 0.668477
Target:  5'- gGAACucGCGCGGCgccac--GGCGCGg -3'
miRNA:   3'- gCUUGu-UGCGCCGaagcaaaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 43118 0.69 0.668477
Target:  5'- -cGGCGGCaGCGGCaUCGgcacGGCGCGc -3'
miRNA:   3'- gcUUGUUG-CGCCGaAGCaaa-CCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 19294 0.69 0.668477
Target:  5'- uGAACAACGCGuGCcUC----GGCGCGc -3'
miRNA:   3'- gCUUGUUGCGC-CGaAGcaaaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 1471 0.69 0.668477
Target:  5'- cCGAGCAGCGCGGCggacacUUCGacgccGaGUGCGu -3'
miRNA:   3'- -GCUUGUUGCGCCG------AAGCaaa--C-CGCGC- -5'
26025 3' -52.6 NC_005342.2 + 13206 0.69 0.679653
Target:  5'- aGGACAGCGCGucacGCcgauggUGUUcGGCGCGa -3'
miRNA:   3'- gCUUGUUGCGC----CGaa----GCAAaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 3241 0.69 0.690783
Target:  5'- cCGGACAGCGCgccguGGUagaUCGUaUGGUGCu -3'
miRNA:   3'- -GCUUGUUGCG-----CCGa--AGCAaACCGCGc -5'
26025 3' -52.6 NC_005342.2 + 15861 0.68 0.701853
Target:  5'- aGAACcccGACGCGGCgcugaacgUCGUgcuGCGCa -3'
miRNA:   3'- gCUUG---UUGCGCCGa-------AGCAaacCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.