miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26025 3' -52.6 NC_005342.2 + 8894 0.84 0.091118
Target:  5'- uCGAugcGCGACGCGGCUUCGUUcgcgccGGCGCu -3'
miRNA:   3'- -GCU---UGUUGCGCCGAAGCAAa-----CCGCGc -5'
26025 3' -52.6 NC_005342.2 + 1820 0.66 0.843877
Target:  5'- aGAGCGugcagGC-CGGCgUCGUgcgguucUGGCGCGc -3'
miRNA:   3'- gCUUGU-----UGcGCCGaAGCAa------ACCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 13792 0.66 0.843877
Target:  5'- gCGAggcGCAGCGaCGGCgacggUUCGgcgacgGGCGCc -3'
miRNA:   3'- -GCU---UGUUGC-GCCG-----AAGCaaa---CCGCGc -5'
26025 3' -52.6 NC_005342.2 + 5139 0.65 0.850028
Target:  5'- uCGAGCAGCGCaGCUUgCGccugaUUgaacaucgccugcaGGCGCGg -3'
miRNA:   3'- -GCUUGUUGCGcCGAA-GCa----AA--------------CCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 20893 0.68 0.701853
Target:  5'- cCGGcGCAGCGCGuGCUaC--UUGGCGCGc -3'
miRNA:   3'- -GCU-UGUUGCGC-CGAaGcaAACCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 30347 0.68 0.734591
Target:  5'- -cAGCAGCGCGGCaa-----GGCGCGg -3'
miRNA:   3'- gcUUGUUGCGCCGaagcaaaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 11783 0.67 0.755898
Target:  5'- aGuACGACGCGGCcaucagCGcgacGGCGCGc -3'
miRNA:   3'- gCuUGUUGCGCCGaa----GCaaa-CCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 18596 0.67 0.76636
Target:  5'- aCGAcCGGCGCGGCa------GGCGCGg -3'
miRNA:   3'- -GCUuGUUGCGCCGaagcaaaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 11675 0.67 0.786839
Target:  5'- uCGAcGCAGCGCcgGGCggCGUgcUGGCGUc -3'
miRNA:   3'- -GCU-UGUUGCG--CCGaaGCAa-ACCGCGc -5'
26025 3' -52.6 NC_005342.2 + 31969 0.66 0.825686
Target:  5'- -uGGCAGCaGCGGCcgaaagccUUcCGgaUGGCGCGg -3'
miRNA:   3'- gcUUGUUG-CGCCG--------AA-GCaaACCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 2466 0.67 0.796831
Target:  5'- aCGAuCGACGCcGCcUCGaggucgGGCGCGa -3'
miRNA:   3'- -GCUuGUUGCGcCGaAGCaaa---CCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 44089 0.67 0.776678
Target:  5'- uCGGACAgguGCGCuGC-UCGgc-GGCGCGc -3'
miRNA:   3'- -GCUUGU---UGCGcCGaAGCaaaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 30786 0.69 0.634777
Target:  5'- cCGAACGACGCGaGCgccugcagGUUcGGCGCc -3'
miRNA:   3'- -GCUUGUUGCGC-CGaag-----CAAaCCGCGc -5'
26025 3' -52.6 NC_005342.2 + 13126 0.66 0.806644
Target:  5'- gCGAACGaauACGuCGGCUugagcaugUCGccgaccgGGCGCGa -3'
miRNA:   3'- -GCUUGU---UGC-GCCGA--------AGCaaa----CCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 46056 0.69 0.646027
Target:  5'- aCGAGCGggcgccguuauGCGCcGCUgCGgauUUGGCGCGg -3'
miRNA:   3'- -GCUUGU-----------UGCGcCGAaGCa--AACCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 20958 0.67 0.775652
Target:  5'- gCGGACGcaaacgcGCGCGGCgcgggCGagugGGUGCGu -3'
miRNA:   3'- -GCUUGU-------UGCGCCGaa---GCaaa-CCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 2402 0.66 0.825686
Target:  5'- -cGGCAACGUGcCUUgGUacGGCGCGg -3'
miRNA:   3'- gcUUGUUGCGCcGAAgCAaaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 3396 0.66 0.843877
Target:  5'- aGAACAGCuGCGGCgcggUCGccaccuggUUGaccuGCGCGu -3'
miRNA:   3'- gCUUGUUG-CGCCGa---AGCa-------AAC----CGCGC- -5'
26025 3' -52.6 NC_005342.2 + 39737 0.69 0.668477
Target:  5'- gGAACucGCGCGGCgccac--GGCGCGg -3'
miRNA:   3'- gCUUGu-UGCGCCGaagcaaaCCGCGC- -5'
26025 3' -52.6 NC_005342.2 + 28477 0.68 0.745305
Target:  5'- cCGAGCGccgcgucgaccGCGCGGgUcgCGgc-GGCGCGg -3'
miRNA:   3'- -GCUUGU-----------UGCGCCgAa-GCaaaCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.