miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26025 5' -56.9 NC_005342.2 + 4066 0.71 0.319425
Target:  5'- cGCCGC-CCuUGCCGagcGGGCGCGacaggucgucgaauUUGCCg -3'
miRNA:   3'- -CGGCGcGGcAUGGU---UCCGUGC--------------AACGG- -5'
26025 5' -56.9 NC_005342.2 + 24207 0.71 0.309422
Target:  5'- gGCCGCcuggccGCCGUAaaacggcgcuugcccCCAGGGCuuccACGgugUGCCg -3'
miRNA:   3'- -CGGCG------CGGCAU---------------GGUUCCG----UGCa--ACGG- -5'
26025 5' -56.9 NC_005342.2 + 42006 0.72 0.270438
Target:  5'- gGCCGCaagguGCCG-ACCGAGGCGuaucgcgugcUGUUGCa -3'
miRNA:   3'- -CGGCG-----CGGCaUGGUUCCGU----------GCAACGg -5'
26025 5' -56.9 NC_005342.2 + 47236 0.76 0.151197
Target:  5'- uGCCGCGCUGaa-CGAGGCGCcg-GCCg -3'
miRNA:   3'- -CGGCGCGGCaugGUUCCGUGcaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 28654 0.69 0.397937
Target:  5'- cGCaGCGgCGcGCCGAGGCacGCGUUGUUc -3'
miRNA:   3'- -CGgCGCgGCaUGGUUCCG--UGCAACGG- -5'
26025 5' -56.9 NC_005342.2 + 1249 0.7 0.371296
Target:  5'- uGgCGCGCC--GCCuGGcGCGCGUUGCg -3'
miRNA:   3'- -CgGCGCGGcaUGGuUC-CGUGCAACGg -5'
26025 5' -56.9 NC_005342.2 + 4580 0.71 0.306393
Target:  5'- gGCCGCGCCGgcaguuUCGAGGUACcGUaauugagcGCCa -3'
miRNA:   3'- -CGGCGCGGCau----GGUUCCGUG-CAa-------CGG- -5'
26025 5' -56.9 NC_005342.2 + 4909 0.78 0.122583
Target:  5'- aUCGCGCCGUacugcgucugguuguACCAGGGCGCaaugGCCg -3'
miRNA:   3'- cGGCGCGGCA---------------UGGUUCCGUGcaa-CGG- -5'
26025 5' -56.9 NC_005342.2 + 23478 0.7 0.369563
Target:  5'- gGCCGCGCUGauccaguUGCCGAggaagucGGCACuUUGCa -3'
miRNA:   3'- -CGGCGCGGC-------AUGGUU-------CCGUGcAACGg -5'
26025 5' -56.9 NC_005342.2 + 25320 0.78 0.121225
Target:  5'- gGCCGCGaCGUACgUAAcGGuCGCGUUGCCg -3'
miRNA:   3'- -CGGCGCgGCAUG-GUU-CC-GUGCAACGG- -5'
26025 5' -56.9 NC_005342.2 + 8958 0.71 0.306393
Target:  5'- gGCCGUGCgCGgcggcgACCGAcGCGCGUucgcggcuUGCCa -3'
miRNA:   3'- -CGGCGCG-GCa-----UGGUUcCGUGCA--------ACGG- -5'
26025 5' -56.9 NC_005342.2 + 8499 0.71 0.34921
Target:  5'- aGUCGC-CCGUGCCGAacagcgcgaccGGCAuacccggcuggaucgUGUUGCCg -3'
miRNA:   3'- -CGGCGcGGCAUGGUU-----------CCGU---------------GCAACGG- -5'
26025 5' -56.9 NC_005342.2 + 46493 0.72 0.29818
Target:  5'- cGCCGCGCU--GCUc-GGCACGUccaagcgUGCCg -3'
miRNA:   3'- -CGGCGCGGcaUGGuuCCGUGCA-------ACGG- -5'
26025 5' -56.9 NC_005342.2 + 9208 0.72 0.277347
Target:  5'- aUCGCGCCGaACgGGGGCGCcucGCCg -3'
miRNA:   3'- cGGCGCGGCaUGgUUCCGUGcaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 26714 0.73 0.25638
Target:  5'- cGCCGCGCCG-GCCAGGaacuugacccauuGCGuCGgcGCCc -3'
miRNA:   3'- -CGGCGCGGCaUGGUUC-------------CGU-GCaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 20550 0.76 0.16408
Target:  5'- gGCCGCGCCGcugAUCGucGGCGCGUcggGUCg -3'
miRNA:   3'- -CGGCGCGGCa--UGGUu-CCGUGCAa--CGG- -5'
26025 5' -56.9 NC_005342.2 + 34248 0.69 0.416366
Target:  5'- aCCGUGCUG-GCCccGGUagaaACGUUGCCg -3'
miRNA:   3'- cGGCGCGGCaUGGuuCCG----UGCAACGG- -5'
26025 5' -56.9 NC_005342.2 + 5022 0.69 0.397937
Target:  5'- gGCCG-GCUGUugGCCGAcgucGGCGCGgcGCUg -3'
miRNA:   3'- -CGGCgCGGCA--UGGUU----CCGUGCaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 20513 0.7 0.38004
Target:  5'- gGCCGcCGCCGcGCCGuucGCugGcgGCCu -3'
miRNA:   3'- -CGGC-GCGGCaUGGUuc-CGugCaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 18791 0.7 0.371296
Target:  5'- aCCGCGCUuaucgcgcgGCCGcaGGGCGCGUgcUGCUa -3'
miRNA:   3'- cGGCGCGGca-------UGGU--UCCGUGCA--ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.