miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26025 5' -56.9 NC_005342.2 + 4830 0.8 0.081695
Target:  5'- cGCgCGCGCCGUGCCGAuGC-CGcUGCCg -3'
miRNA:   3'- -CG-GCGCGGCAUGGUUcCGuGCaACGG- -5'
26025 5' -56.9 NC_005342.2 + 4580 0.71 0.306393
Target:  5'- gGCCGCGCCGgcaguuUCGAGGUACcGUaauugagcGCCa -3'
miRNA:   3'- -CGGCGCGGCau----GGUUCCGUG-CAa-------CGG- -5'
26025 5' -56.9 NC_005342.2 + 24207 0.71 0.309422
Target:  5'- gGCCGCcuggccGCCGUAaaacggcgcuugcccCCAGGGCuuccACGgugUGCCg -3'
miRNA:   3'- -CGGCG------CGGCAU---------------GGUUCCG----UGCa--ACGG- -5'
26025 5' -56.9 NC_005342.2 + 34165 0.66 0.627541
Target:  5'- gGCCGC-CCGcaucauagaccugaaUACCAuccgcguuuGGCGCGccGCCa -3'
miRNA:   3'- -CGGCGcGGC---------------AUGGUu--------CCGUGCaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 20550 0.76 0.16408
Target:  5'- gGCCGCGCCGcugAUCGucGGCGCGUcggGUCg -3'
miRNA:   3'- -CGGCGCGGCa--UGGUu-CCGUGCAa--CGG- -5'
26025 5' -56.9 NC_005342.2 + 17618 0.74 0.214379
Target:  5'- gGCCGCGCCcgGUGCCGuGGCcgacACGUUcGCg -3'
miRNA:   3'- -CGGCGCGG--CAUGGUuCCG----UGCAA-CGg -5'
26025 5' -56.9 NC_005342.2 + 26714 0.73 0.25638
Target:  5'- cGCCGCGCCG-GCCAGGaacuugacccauuGCGuCGgcGCCc -3'
miRNA:   3'- -CGGCGCGGCaUGGUUC-------------CGU-GCaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 31022 0.72 0.270438
Target:  5'- cCUGCGCCGacGCCGA-GCACGgcGCCc -3'
miRNA:   3'- cGGCGCGGCa-UGGUUcCGUGCaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 9208 0.72 0.277347
Target:  5'- aUCGCGCCGaACgGGGGCGCcucGCCg -3'
miRNA:   3'- cGGCGCGGCaUGgUUCCGUGcaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 39741 0.72 0.298919
Target:  5'- cUCGCGCgGcGCCAcGGCGCGgacGCCu -3'
miRNA:   3'- cGGCGCGgCaUGGUuCCGUGCaa-CGG- -5'
26025 5' -56.9 NC_005342.2 + 18219 0.72 0.290138
Target:  5'- -aCGCGCCGgaaaucuacgacGCCGAcGGCACGcUGCUg -3'
miRNA:   3'- cgGCGCGGCa-----------UGGUU-CCGUGCaACGG- -5'
26025 5' -56.9 NC_005342.2 + 42006 0.72 0.270438
Target:  5'- gGCCGCaagguGCCG-ACCGAGGCGuaucgcgugcUGUUGCa -3'
miRNA:   3'- -CGGCG-----CGGCaUGGUUCCGU----------GCAACGg -5'
26025 5' -56.9 NC_005342.2 + 25320 0.78 0.121225
Target:  5'- gGCCGCGaCGUACgUAAcGGuCGCGUUGCCg -3'
miRNA:   3'- -CGGCGCgGCAUG-GUU-CC-GUGCAACGG- -5'
26025 5' -56.9 NC_005342.2 + 46493 0.72 0.29818
Target:  5'- cGCCGCGCU--GCUc-GGCACGUccaagcgUGCCg -3'
miRNA:   3'- -CGGCGCGGcaUGGuuCCGUGCA-------ACGG- -5'
26025 5' -56.9 NC_005342.2 + 4909 0.78 0.122583
Target:  5'- aUCGCGCCGUacugcgucugguuguACCAGGGCGCaaugGCCg -3'
miRNA:   3'- cGGCGCGGCA---------------UGGUUCCGUGcaa-CGG- -5'
26025 5' -56.9 NC_005342.2 + 687 0.72 0.270438
Target:  5'- cGCCcgcgaGCGCCGUGgCGAGGUugaUUGCCg -3'
miRNA:   3'- -CGG-----CGCGGCAUgGUUCCGugcAACGG- -5'
26025 5' -56.9 NC_005342.2 + 38732 0.72 0.298919
Target:  5'- cGCUGCaGCUGUucGCCGAGGCAaaaacgcgcuuCGUUgaGCCg -3'
miRNA:   3'- -CGGCG-CGGCA--UGGUUCCGU-----------GCAA--CGG- -5'
26025 5' -56.9 NC_005342.2 + 8958 0.71 0.306393
Target:  5'- gGCCGUGCgCGgcggcgACCGAcGCGCGUucgcggcuUGCCa -3'
miRNA:   3'- -CGGCGCG-GCa-----UGGUUcCGUGCA--------ACGG- -5'
26025 5' -56.9 NC_005342.2 + 47236 0.76 0.151197
Target:  5'- uGCCGCGCUGaa-CGAGGCGCcg-GCCg -3'
miRNA:   3'- -CGGCGCGGCaugGUUCCGUGcaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 13850 0.73 0.231866
Target:  5'- cGCCGCGCCGcgcgaagucgGCCGgcacGGGCugcGCGgcgGCCg -3'
miRNA:   3'- -CGGCGCGGCa---------UGGU----UCCG---UGCaa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.