miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26025 5' -56.9 NC_005342.2 + 385 0.66 0.612237
Target:  5'- aGaaGCGCCGU-CCGcaggcGGCGCGcUGCa -3'
miRNA:   3'- -CggCGCGGCAuGGUu----CCGUGCaACGg -5'
26025 5' -56.9 NC_005342.2 + 469 0.69 0.444963
Target:  5'- gGCCGgGgUGUacgagGCCAcGGCGCGcgacgUGCCg -3'
miRNA:   3'- -CGGCgCgGCA-----UGGUuCCGUGCa----ACGG- -5'
26025 5' -56.9 NC_005342.2 + 522 0.67 0.515644
Target:  5'- aGCCuuGCaCGU-UCAGGGCGCGcagGCCu -3'
miRNA:   3'- -CGGcgCG-GCAuGGUUCCGUGCaa-CGG- -5'
26025 5' -56.9 NC_005342.2 + 623 0.68 0.494943
Target:  5'- -aCGC-CCGUgaacgugaaACgCAAGGCACGguagUGCCc -3'
miRNA:   3'- cgGCGcGGCA---------UG-GUUCCGUGCa---ACGG- -5'
26025 5' -56.9 NC_005342.2 + 687 0.72 0.270438
Target:  5'- cGCCcgcgaGCGCCGUGgCGAGGUugaUUGCCg -3'
miRNA:   3'- -CGG-----CGCGGCAUgGUUCCGugcAACGG- -5'
26025 5' -56.9 NC_005342.2 + 718 0.71 0.335284
Target:  5'- gGCCgGCGCCucGUucagcgcggcagucGCCGccGGCGCGUUGCUa -3'
miRNA:   3'- -CGG-CGCGG--CA--------------UGGUu-CCGUGCAACGG- -5'
26025 5' -56.9 NC_005342.2 + 1102 0.69 0.444963
Target:  5'- aGUCgGUGCCGUGCUgcGcGCgACGUUGCa -3'
miRNA:   3'- -CGG-CGCGGCAUGGuuC-CG-UGCAACGg -5'
26025 5' -56.9 NC_005342.2 + 1249 0.7 0.371296
Target:  5'- uGgCGCGCC--GCCuGGcGCGCGUUGCg -3'
miRNA:   3'- -CgGCGCGGcaUGGuUC-CGUGCAACGg -5'
26025 5' -56.9 NC_005342.2 + 1830 0.72 0.284397
Target:  5'- gGCCgGCGUCGUGCgGuucuGGCGCGccugGCCc -3'
miRNA:   3'- -CGG-CGCGGCAUGgUu---CCGUGCaa--CGG- -5'
26025 5' -56.9 NC_005342.2 + 2228 0.67 0.526126
Target:  5'- cGCCaGCgcagGCCGUGCCAGcccucGGCGCcgaGUggcagGCCg -3'
miRNA:   3'- -CGG-CG----CGGCAUGGUU-----CCGUG---CAa----CGG- -5'
26025 5' -56.9 NC_005342.2 + 2384 0.67 0.515644
Target:  5'- cGCCugguCGCCGUACagcGGCaACGU-GCCu -3'
miRNA:   3'- -CGGc---GCGGCAUGguuCCG-UGCAaCGG- -5'
26025 5' -56.9 NC_005342.2 + 2663 0.67 0.530341
Target:  5'- cGUCGCGCCGgcggcgGCCGacAGGCcgagcuCGUcggcgagguuguucgUGCCc -3'
miRNA:   3'- -CGGCGCGGCa-----UGGU--UCCGu-----GCA---------------ACGG- -5'
26025 5' -56.9 NC_005342.2 + 2732 0.68 0.505248
Target:  5'- uGCgGcCGCCGUGCC--GGuCGCGUUcGUCa -3'
miRNA:   3'- -CGgC-GCGGCAUGGuuCC-GUGCAA-CGG- -5'
26025 5' -56.9 NC_005342.2 + 3161 0.67 0.536687
Target:  5'- aGUC-CGCCGUuuucuuGCCcGGGCGCG--GCCg -3'
miRNA:   3'- -CGGcGCGGCA------UGGuUCCGUGCaaCGG- -5'
26025 5' -56.9 NC_005342.2 + 4066 0.71 0.319425
Target:  5'- cGCCGC-CCuUGCCGagcGGGCGCGacaggucgucgaauUUGCCg -3'
miRNA:   3'- -CGGCGcGGcAUGGU---UCCGUGC--------------AACGG- -5'
26025 5' -56.9 NC_005342.2 + 4147 0.68 0.484734
Target:  5'- cGCCGCGCuCGUGCUGcaGCGgCGUgUGCUu -3'
miRNA:   3'- -CGGCGCG-GCAUGGUucCGU-GCA-ACGG- -5'
26025 5' -56.9 NC_005342.2 + 4580 0.71 0.306393
Target:  5'- gGCCGCGCCGgcaguuUCGAGGUACcGUaauugagcGCCa -3'
miRNA:   3'- -CGGCGCGGCau----GGUUCCGUG-CAa-------CGG- -5'
26025 5' -56.9 NC_005342.2 + 4830 0.8 0.081695
Target:  5'- cGCgCGCGCCGUGCCGAuGC-CGcUGCCg -3'
miRNA:   3'- -CG-GCGCGGCAUGGUUcCGuGCaACGG- -5'
26025 5' -56.9 NC_005342.2 + 4909 0.78 0.122583
Target:  5'- aUCGCGCCGUacugcgucugguuguACCAGGGCGCaaugGCCg -3'
miRNA:   3'- cGGCGCGGCA---------------UGGUUCCGUGcaa-CGG- -5'
26025 5' -56.9 NC_005342.2 + 5022 0.69 0.397937
Target:  5'- gGCCG-GCUGUugGCCGAcgucGGCGCGgcGCUg -3'
miRNA:   3'- -CGGCgCGGCA--UGGUU----CCGUGCaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.