Results 1 - 20 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26025 | 5' | -56.9 | NC_005342.2 | + | 45549 | 1.14 | 0.000251 |
Target: 5'- cGCCGCGCCGUACCAAGGCACGUUGCCg -3' miRNA: 3'- -CGGCGCGGCAUGGUUCCGUGCAACGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 4830 | 0.8 | 0.081695 |
Target: 5'- cGCgCGCGCCGUGCCGAuGC-CGcUGCCg -3' miRNA: 3'- -CG-GCGCGGCAUGGUUcCGuGCaACGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 25320 | 0.78 | 0.121225 |
Target: 5'- gGCCGCGaCGUACgUAAcGGuCGCGUUGCCg -3' miRNA: 3'- -CGGCGCgGCAUG-GUU-CC-GUGCAACGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 4909 | 0.78 | 0.122583 |
Target: 5'- aUCGCGCCGUacugcgucugguuguACCAGGGCGCaaugGCCg -3' miRNA: 3'- cGGCGCGGCA---------------UGGUUCCGUGcaa-CGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 17069 | 0.76 | 0.143126 |
Target: 5'- cGgCGCGCCGUuugggcggcgacGCCAAGGCaggcggcgacGCGUUcGCCg -3' miRNA: 3'- -CgGCGCGGCA------------UGGUUCCG----------UGCAA-CGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 47236 | 0.76 | 0.151197 |
Target: 5'- uGCCGCGCUGaa-CGAGGCGCcg-GCCg -3' miRNA: 3'- -CGGCGCGGCaugGUUCCGUGcaaCGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 29410 | 0.76 | 0.15968 |
Target: 5'- cGCCGCGCCG-GCUGccGCACccggGUUGCCg -3' miRNA: 3'- -CGGCGCGGCaUGGUucCGUG----CAACGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 20550 | 0.76 | 0.16408 |
Target: 5'- gGCCGCGCCGcugAUCGucGGCGCGUcggGUCg -3' miRNA: 3'- -CGGCGCGGCa--UGGUu-CCGUGCAa--CGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 10989 | 0.74 | 0.198035 |
Target: 5'- cGCCGCGCCGUAC--GGGUAgGUgaaaGCUu -3' miRNA: 3'- -CGGCGCGGCAUGguUCCGUgCAa---CGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 17618 | 0.74 | 0.214379 |
Target: 5'- gGCCGCGCCcgGUGCCGuGGCcgacACGUUcGCg -3' miRNA: 3'- -CGGCGCGG--CAUGGUuCCG----UGCAA-CGg -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 34088 | 0.73 | 0.225907 |
Target: 5'- cGCCGCGCagccCGUGCCGGccgacuucgcgcGGCGCGgcGCg -3' miRNA: 3'- -CGGCGCG----GCAUGGUU------------CCGUGCaaCGg -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 13850 | 0.73 | 0.231866 |
Target: 5'- cGCCGCGCCGcgcgaagucgGCCGgcacGGGCugcGCGgcgGCCg -3' miRNA: 3'- -CGGCGCGGCa---------UGGU----UCCG---UGCaa-CGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 26714 | 0.73 | 0.25638 |
Target: 5'- cGCCGCGCCG-GCCAGGaacuugacccauuGCGuCGgcGCCc -3' miRNA: 3'- -CGGCGCGGCaUGGUUC-------------CGU-GCaaCGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 47057 | 0.73 | 0.257035 |
Target: 5'- cGCgGCGCaCGcUACgAGGGCGCaaUGCCg -3' miRNA: 3'- -CGgCGCG-GC-AUGgUUCCGUGcaACGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 34630 | 0.72 | 0.270438 |
Target: 5'- uGCCGCGCCcguacaccGUGCCGaaAGGguCGUU-CCa -3' miRNA: 3'- -CGGCGCGG--------CAUGGU--UCCguGCAAcGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 687 | 0.72 | 0.270438 |
Target: 5'- cGCCcgcgaGCGCCGUGgCGAGGUugaUUGCCg -3' miRNA: 3'- -CGG-----CGCGGCAUgGUUCCGugcAACGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 42006 | 0.72 | 0.270438 |
Target: 5'- gGCCGCaagguGCCG-ACCGAGGCGuaucgcgugcUGUUGCa -3' miRNA: 3'- -CGGCG-----CGGCaUGGUUCCGU----------GCAACGg -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 31022 | 0.72 | 0.270438 |
Target: 5'- cCUGCGCCGacGCCGA-GCACGgcGCCc -3' miRNA: 3'- cGGCGCGGCa-UGGUUcCGUGCaaCGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 6534 | 0.72 | 0.277347 |
Target: 5'- aUCGCGCCGUGCCGcccgaaGUUGCCg -3' miRNA: 3'- cGGCGCGGCAUGGUuccgugCAACGG- -5' |
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26025 | 5' | -56.9 | NC_005342.2 | + | 42926 | 0.72 | 0.277347 |
Target: 5'- cGCCGCGCCGacgucgGCCAAcagccGGC-CGccugGCCg -3' miRNA: 3'- -CGGCGCGGCa-----UGGUU-----CCGuGCaa--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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