miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26026 5' -57.6 NC_005342.2 + 30326 0.66 0.585977
Target:  5'- uCGCGaacGUgUCGGCCacGGCaccGGGCGCGGc -3'
miRNA:   3'- -GCGU---UAgAGCCGGcaCUG---CCCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 44484 0.66 0.585977
Target:  5'- gGCGgcAUCUUGGCCGUuacCGaGGuCGCGAa -3'
miRNA:   3'- gCGU--UAGAGCCGGCAcu-GC-CC-GUGCU- -5'
26026 5' -57.6 NC_005342.2 + 47709 0.66 0.57521
Target:  5'- cCGUGAccgugCUCGGCggCGUGACGaccacaucgaacGGCACGGc -3'
miRNA:   3'- -GCGUUa----GAGCCG--GCACUGC------------CCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 2552 0.66 0.57521
Target:  5'- gGCAAUCaCGGCCGUccaGGCGGuCGUGAa -3'
miRNA:   3'- gCGUUAGaGCCGGCA---CUGCCcGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 20156 0.66 0.564488
Target:  5'- aGCcuaCUCGGCCGccggcuCGGGCGCa- -3'
miRNA:   3'- gCGuuaGAGCCGGCacu---GCCCGUGcu -5'
26026 5' -57.6 NC_005342.2 + 8206 0.66 0.564488
Target:  5'- uGCGaggcGUC-CGcGCCGUGGCGccGCGCGAg -3'
miRNA:   3'- gCGU----UAGaGC-CGGCACUGCc-CGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 2265 0.66 0.55382
Target:  5'- gGCAgGUCgUGcGCCGUGGCcGGCACGc -3'
miRNA:   3'- gCGU-UAGaGC-CGGCACUGcCCGUGCu -5'
26026 5' -57.6 NC_005342.2 + 46834 0.66 0.55382
Target:  5'- uGCcg-CUCaGCgGUGAcgauCGGGCACGGu -3'
miRNA:   3'- gCGuuaGAGcCGgCACU----GCCCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 11176 0.67 0.522206
Target:  5'- uCGCGAcCcgCGcGCaCGUGAuuCGGGCGCGGc -3'
miRNA:   3'- -GCGUUaGa-GC-CG-GCACU--GCCCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 30812 0.67 0.511821
Target:  5'- gCGCGAagUUGGCCGccauaucGACGcGCACGAc -3'
miRNA:   3'- -GCGUUagAGCCGGCa------CUGCcCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 4057 0.67 0.501521
Target:  5'- cCGCAAagUCGccgcccuuGCCGa-GCGGGCGCGAc -3'
miRNA:   3'- -GCGUUagAGC--------CGGCacUGCCCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 20325 0.67 0.501521
Target:  5'- gGCuugC-CGGCCGUgccGACGGGUaccGCGAc -3'
miRNA:   3'- gCGuuaGaGCCGGCA---CUGCCCG---UGCU- -5'
26026 5' -57.6 NC_005342.2 + 3227 0.67 0.491315
Target:  5'- gCGCGGUCgagCGGCCG-GACa-GCGCGc -3'
miRNA:   3'- -GCGUUAGa--GCCGGCaCUGccCGUGCu -5'
26026 5' -57.6 NC_005342.2 + 43230 0.68 0.451507
Target:  5'- aGuCAAUgUCGGUgaaggccggCGUGcucGCGGGCGCGAc -3'
miRNA:   3'- gC-GUUAgAGCCG---------GCAC---UGCCCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 16901 0.68 0.451507
Target:  5'- aGCGGUCUgaugaagcUGGCCGgcauuGCGGGCGCc- -3'
miRNA:   3'- gCGUUAGA--------GCCGGCac---UGCCCGUGcu -5'
26026 5' -57.6 NC_005342.2 + 24732 0.68 0.432275
Target:  5'- gGCGcgUUCGccGCCGUGaucaagacggcgGCGGGUACGGg -3'
miRNA:   3'- gCGUuaGAGC--CGGCAC------------UGCCCGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 8945 0.68 0.42284
Target:  5'- gGCugGAUCgugCGGCCGUG-CGcGGCGgCGAc -3'
miRNA:   3'- gCG--UUAGa--GCCGGCACuGC-CCGU-GCU- -5'
26026 5' -57.6 NC_005342.2 + 21232 0.69 0.386373
Target:  5'- aCGCAAugggucaaguUCcUGGCCGgcgcGGCGGGCAuCGAc -3'
miRNA:   3'- -GCGUU----------AGaGCCGGCa---CUGCCCGU-GCU- -5'
26026 5' -57.6 NC_005342.2 + 42847 0.69 0.385488
Target:  5'- gGCGG-CUCGcCCGUGACGGacgacaaugugcuGCGCGAg -3'
miRNA:   3'- gCGUUaGAGCcGGCACUGCC-------------CGUGCU- -5'
26026 5' -57.6 NC_005342.2 + 14478 0.69 0.377585
Target:  5'- -cCAAUCgugaaCGUGACGGGCACGAc -3'
miRNA:   3'- gcGUUAGagccgGCACUGCCCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.