miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26028 3' -56.9 NC_005342.2 + 5592 0.71 0.300706
Target:  5'- -gGCUGCuCGACGg-GAGACGCUGCg- -3'
miRNA:   3'- ugCGGCG-GUUGUagCUCUGCGACGag -5'
26028 3' -56.9 NC_005342.2 + 46328 0.71 0.308317
Target:  5'- gACGCC-CCGAUAUCGGGGCGUUaaacuuuaGCUa -3'
miRNA:   3'- -UGCGGcGGUUGUAGCUCUGCGA--------CGAg -5'
26028 3' -56.9 NC_005342.2 + 16914 0.71 0.308317
Target:  5'- -aGCUgGCCGGCAUUGcGGGCGCcgUGCUCg -3'
miRNA:   3'- ugCGG-CGGUUGUAGC-UCUGCG--ACGAG- -5'
26028 3' -56.9 NC_005342.2 + 22019 0.71 0.308317
Target:  5'- -gGCCGCCGGCAUCGAcgccGCGCgcaauaGCUa -3'
miRNA:   3'- ugCGGCGGUUGUAGCUc---UGCGa-----CGAg -5'
26028 3' -56.9 NC_005342.2 + 19464 0.71 0.308317
Target:  5'- cGCGCCGCCGcgacccGCG-CGGucGACGCggcGCUCg -3'
miRNA:   3'- -UGCGGCGGU------UGUaGCU--CUGCGa--CGAG- -5'
26028 3' -56.9 NC_005342.2 + 10648 0.71 0.316073
Target:  5'- cGCGCCgGCCGgugcacgcuauGCAcUCGGuucGACGCUGUUCg -3'
miRNA:   3'- -UGCGG-CGGU-----------UGU-AGCU---CUGCGACGAG- -5'
26028 3' -56.9 NC_005342.2 + 29933 0.7 0.323976
Target:  5'- cCGCCGCCGAUcgAUCGAcGCGCcGCg- -3'
miRNA:   3'- uGCGGCGGUUG--UAGCUcUGCGaCGag -5'
26028 3' -56.9 NC_005342.2 + 22422 0.7 0.329595
Target:  5'- gAC-CCGCUGACAUCGAgcggcgcguaccagGACGC-GCUCg -3'
miRNA:   3'- -UGcGGCGGUUGUAGCU--------------CUGCGaCGAG- -5'
26028 3' -56.9 NC_005342.2 + 44553 0.7 0.332025
Target:  5'- gACGaCGCUGGCcgCGAGACGCUGaagaagaUCg -3'
miRNA:   3'- -UGCgGCGGUUGuaGCUCUGCGACg------AG- -5'
26028 3' -56.9 NC_005342.2 + 1629 0.7 0.357046
Target:  5'- aACGCC-CCGAUAUCGGGGCGUcaaguaCUCg -3'
miRNA:   3'- -UGCGGcGGUUGUAGCUCUGCGac----GAG- -5'
26028 3' -56.9 NC_005342.2 + 28143 0.7 0.357046
Target:  5'- cGCGCCGCCGaggcugACAgCGAuGCGCauccggUGCUCg -3'
miRNA:   3'- -UGCGGCGGU------UGUaGCUcUGCG------ACGAG- -5'
26028 3' -56.9 NC_005342.2 + 8988 0.69 0.364806
Target:  5'- uGCGCCuGCCGGCcgcucggggugcgGUCGAGcauugcACGCaGCUCg -3'
miRNA:   3'- -UGCGG-CGGUUG-------------UAGCUC------UGCGaCGAG- -5'
26028 3' -56.9 NC_005342.2 + 37873 0.69 0.374447
Target:  5'- -gGCCGCCGAUcUUGGcACGCcGCUCg -3'
miRNA:   3'- ugCGGCGGUUGuAGCUcUGCGaCGAG- -5'
26028 3' -56.9 NC_005342.2 + 21349 0.69 0.383361
Target:  5'- aACGCCGCCAGCuuuGUCGuGaACGCgccgaccacGUUCa -3'
miRNA:   3'- -UGCGGCGGUUG---UAGCuC-UGCGa--------CGAG- -5'
26028 3' -56.9 NC_005342.2 + 34845 0.69 0.383361
Target:  5'- uCGuUCGCCGGCAUCagcauGACGCaGCUCg -3'
miRNA:   3'- uGC-GGCGGUUGUAGcu---CUGCGaCGAG- -5'
26028 3' -56.9 NC_005342.2 + 31125 0.69 0.391503
Target:  5'- -aGUCGCCcgucgaucgccuuGGCcgCGAcGCGCUGCUCg -3'
miRNA:   3'- ugCGGCGG-------------UUGuaGCUcUGCGACGAG- -5'
26028 3' -56.9 NC_005342.2 + 23831 0.69 0.410933
Target:  5'- -gGCCGCgAACAUUGc-GCGCUGCg- -3'
miRNA:   3'- ugCGGCGgUUGUAGCucUGCGACGag -5'
26028 3' -56.9 NC_005342.2 + 25039 0.69 0.410933
Target:  5'- uACGCUGCaCAAC-UCGAGcggcagcaccGCGCuucUGCUCg -3'
miRNA:   3'- -UGCGGCG-GUUGuAGCUC----------UGCG---ACGAG- -5'
26028 3' -56.9 NC_005342.2 + 10561 0.69 0.410933
Target:  5'- cGCGCCggGCCGGCcgacgagcggGUCGGGcGCGC-GCUCg -3'
miRNA:   3'- -UGCGG--CGGUUG----------UAGCUC-UGCGaCGAG- -5'
26028 3' -56.9 NC_005342.2 + 11788 0.69 0.410933
Target:  5'- gACGCgGCCAuCAgcgCGAcGGCGC-GCUCc -3'
miRNA:   3'- -UGCGgCGGUuGUa--GCU-CUGCGaCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.